Gene omics information

Query gene ID	Contig12342_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.52	68.3	Contig12342_at	Contig12342	-	-	7e-6	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	S.X.	H.G.	Please select
0.52	68.3	rbah33e14_s_at	rbah33e14	-	-	4e+0	At5g22580	-	S.X.	H.G.	Please select
0.40	53.1	Contig24918_at	Contig24918	-	-	1e+1	At4g29850	unknown protein	S.X.	H.G.	Please select
0.26	30.4	Contig5166_at	Contig5166	-	-	7e-2	At2g39940	COI1 (CORONATINE INSENSITIVE 1)	S.X.	H.G.	Please select
0.24	27.2	Contig6099_at	Contig6099	-	-	6e-35	At1g07370	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	S.X.	H.G.	Please select
0.21	22.6	Contig26001_at	Contig26001	-	-	4e+0	At1g03710	-	S.X.	H.G.	Please select
0.20	21.1	Contig9249_at	Contig9249	-	-	1e+0	At3g15110	unknown protein	S.X.	H.G.	Please select
0.12	10.4	HVSMEn0017L11f_at	HVSMEn0017L11f	-	-	1e-7	At1g29920	CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2)	S.X.	H.G.	Please select
0.11	9.4	HS09I04u_at	HS09I04u	-	-	4e+0	At5g35920	CYP79A4P	S.X.	H.G.	Please select
0.10	8.4	Contig17670_at	Contig17670	-	-	3e+0	At5g48420	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.7	99.9	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
26.5	99.8	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
23.0	99.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
20.3	99.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.4	99.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.0	99.3	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.9	98.7	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.0	98.4	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.9	98.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	6e-45	180	EBes01_SQ004_N07_at	EBes01_SQ004_N07	-	-	3e-1	At1g20140	ASK4 (ARABIDOPSIS SKP1-LIKE 4)	C.G.	S.X.	Please select
0.35	6e-45	180	Contig1591_s_at	Contig1591	-	-	2e-12	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
0.14	4e-18	91	HZ65O04r_at	HZ65O04r	-	-	4e-6	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	C.G.	S.X.	Please select
0.26	6e-8	57	Contig13926_at	Contig13926	-	-	3e-5	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	C.G.	S.X.	Please select
0.04	2e-4	46	Contig11133_at	Contig11133	-	-	4e-1	At4g29480	mitochondrial ATP synthase g subunit family protein	C.G.	S.X.	Please select
0.02	9e-4	44	Contig4944_s_at	Contig4944	-	-	3e+0	At5g14360	ubiquitin family protein	C.G.	S.X.	Please select
0.03	9e-4	44	Contig14979_s_at	Contig14979	-	-	2e-2	At4g30460	glycine-rich protein	C.G.	S.X.	Please select
0.02	3e-3	42	Contig9804_at	Contig9804	-	-	2e-3	At3g19910	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e-3	42	Contig4111_at	Contig4111	-	-	6e-1	At1g49010	myb family transcription factor	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	7e-6	52	Arabidopsis thaliana	At1g75950	843928	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	1e-17	91	Glycine max	Gma.5575.1.S1_at	BU549678	-	-	3e-20	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
Os12g0570700	0.34	1e-42	Oryza sativa	Os02g0101600	CB967135	-	SKP1 component family protein	2e-17	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	C.G.	S.X.	Please select
0.19	5e-20	99	Populus trichocarpa	PtpAffx.32590.1.S1_at	CV281093	hypothetical protein	-	1e-29	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.82	6e-173	607	Triticum aestivum	Ta.23791.1.S1_a_at	CD936252	-	-	2e-9	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	C.G.	S.X.	Please select
0.19	7e-19	93	Vitis vinifera	1614112_at	BQ797230	hypothetical protein LOC100252349	-	3e-11	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	C.G.	S.X.	Please select
0.35	3e-43	174	Zea mays	Zm.14147.1.A1_at	CD432997	hypothetical protein LOC100273349	-	6e-13	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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