Gene omics information

Query gene ID	Contig12335_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig12335_at	Contig12335	-	-	5e-20	At2g22120	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.56	74.3	Contig7199_at	Contig7199	-	-	3e-2	At5g49840	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding	S.X.	H.G.	Please select
0.50	66.9	rbaal20l21_s_at	rbaal20l21	-	-	8e-2	At4g17360	formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase/ methyltransferase	S.X.	H.G.	Please select
0.50	66.9	Contig10686_at	Contig10686	-	-	4e-8	At4g24180	-	S.X.	H.G.	Please select
0.47	62.2	Contig17229_at	Contig17229	-	-	1e+1	At2g28570	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig13161_at	Contig13161	-	-	8e-1	At5g51760	AHG1 (ABA-hypersensitive germination 1)	S.X.	H.G.	Please select
0.45	59.3	Contig154_at	Contig154	-	-	4e-4	At4g27230	HTA2 (histone H2A)	S.X.	H.G.	Please select
0.42	55.2	Contig22918_at	Contig22918	-	-	3e-1	At2g21140	ATPRP2 (PROLINE-RICH PROTEIN 2)	S.X.	H.G.	Please select
0.38	49.5	Contig7661_at	Contig7661	-	-	2e-53	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	S.X.	H.G.	Please select
0.35	45.1	Contig8176_at	Contig8176	-	-	8e-32	At1g05350	thiF family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.2	96.3	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
3.5	95.1	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.5	95.1	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.2	94.3	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.1	94.1	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.0	93.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	2e-160	565	Contig20487_at	Contig20487	-	-	5e+0	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig21390_at	Contig21390	-	-	2e+0	At1g07900	LBD1 (LOB DOMAIN-CONTAINING PROTEIN 1)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig10285_at	Contig10285	-	-	4e-2	At1g11560	OST3/OST6 family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig17063_at	Contig17063	-	-	5e-16	At1g65650	UCH2	C.G.	S.X.	Please select
0.02	1e+0	34	Contig14340_at	Contig14340	-	-	5e+0	At4g06634	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig22098_at	Contig22098	-	-	4e-2	At1g01020	ARV1	C.G.	S.X.	Please select
0.02	1e+0	34	Contig24823_at	Contig24823	-	-	4e-1	At2g28810	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig6020_at	Contig6020	-	-	5e-5	At3g50670	U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K)	C.G.	S.X.	Please select
0.02	5e+0	32	HVSMEh0089H02r2_at	HVSMEh0089H02r2	-	-	1e+0	At2g36000	mitochondrial transcription termination factor-related / mTERF-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	5e-20	99	Arabidopsis thaliana	At2g22120	816746	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	3e-7	57	Glycine max	GmaAffx.85653.1.S1_at	BE346259	-	-	8e-29	At2g22120	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.58	0	880	Oryza sativa	Os11g0604600	AK102376.1	-	Conserved hypothetical protein	1e-27	At2g22120	protein binding / zinc ion binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.53	1e-33	145	Populus trichocarpa	PtpAffx.205203.1.S1_at	pmrna10311	hypothetical protein	-	1e-50	At2g22120	protein binding / zinc ion binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.55	0	926	Triticum aestivum	Ta.7126.2.S1_at	BJ278083	-	-	2e-2	At2g22120	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.07	4e-12	71	Vitis vinifera	1621306_at	CF518503	hypothetical protein LOC100266317	-	2e-25	At2g22120	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.54	0	795	Zea mays	Zm.4455.1.A1_at	CF635489	zinc finger, C3HC4 type family protein	-	5e-17	At2g22120	protein binding / zinc ion binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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