CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig12332_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 90.8 Contig12332_at Contig12332 - - 4e+0 At3g50410 OBP1 (OBF BINDING PROTEIN 1) S.X. H.G.
0.77 90.8 Contig26369_at Contig26369 - - 4e+0 At4g02620 vacuolar ATPase subunit F family protein S.X. H.G.
0.61 78.7 Contig807_s_at Contig807 - - 6e-53 At1g55490 CPN60B (CHAPERONIN 60 BETA) S.X. H.G.
0.48 63.2 Contig11177_at Contig11177 - - 5e-1 At5g53730 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein S.X. H.G.
0.36 47.1 Contig14949_at Contig14949 - - 3e-2 At3g19100 calcium-dependent protein kinase, putative / CDPK, putative S.X. H.G.
0.28 35.5 Contig8505_s_at Contig8505 - - 2e+0 At5g18280 ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) S.X. H.G.
0.27 32.1 Contig13428_at Contig13428 - - 6e-5 At3g17160 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.1 99.9 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
28.5 99.8 GSM261061 Xantha b-12 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
25.8 99.8 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
17.2 99.6 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
14.9 99.5 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
13.7 99.5 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.1 98.7 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.1 98.0 GSM261065 Xantha s-46 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.0 97.9 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.0 97.9 GSM440973 Stressed awn_Rep2 GSE17669 Gene expression in the barley spike during drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-5 48 HU14P01u_at HU14P01u - - 1e+0 At2g23430 ICK1 C.G. S.X.
0.03 3e-5 48 Contig842_x_at Contig842 - - 3e-8 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
0.06 3e-5 48 Contig13088_at Contig13088 - - 3e+0 At4g12440 adenine phosphoribosyltransferase, putative C.G. S.X.
0.02 2e-3 42 Contig8142_at Contig8142 - - 8e-26 At1g12640 membrane bound O-acyl transferase (MBOAT) family protein C.G. S.X.
0.04 2e-3 42 Contig4008_at Contig4008 - - 1e+0 At2g01930 BPC1 (BASIC PENTACYSTEINE1) C.G. S.X.
0.03 7e-3 40 Contig4747_at Contig4747 - - 2e+0 At2g05620 PGR5 (proton gradient regulation 5) C.G. S.X.
0.02 7e-3 40 Contig10043_at Contig10043 - - 8e-38 At5g13280 AK-LYS1 (ASPARTATE KINASE 1) C.G. S.X.
0.03 7e-3 40 Contig4072_at Contig4072 - - 2e+0 At2g31610 40S ribosomal protein S3 (RPS3A) C.G. S.X.
0.03 7e-3 40 Contig8103_at Contig8103 - - 4e-2 At3g53235 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e+0 32 Arabidopsis thaliana At3g50410 824205 OBP1 (OBF BINDING PROTEIN 1) Arabidopsis Dof protein containing a single 51-amino acid zinc finger DNA-binding domain, which may play an important roles in plant growth and development. - - - C.G. S.X.
0.05 3e-4 46 Glycine max GmaAffx.12286.2.S1_at BM108265 - - 1e-11 At5g38510 rhomboid family protein C.G. S.X.
0.14 2e-15 83 Oryza sativa Os05g0535600 9633.m04304 - Inositol polyphosphate related phosphatase familyprotein 6e-11 At1g34120 IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I) C.G. S.X.
0.03 6e-6 52 Populus trichocarpa PtpAffx.205632.1.S1_at pmrna11124 hypothetical protein - 9e-10 At1g34120 IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I) C.G. S.X.
0.07 2e-5 50 Triticum aestivum TaAffx.83046.1.S1_at CA662735 - - 3e+0 At2g35658 unknown protein C.G. S.X.
0.05 2e-5 48 Vitis vinifera 1614133_at CD711415 hypothetical protein LOC100255873 - 5e-2 At1g43800 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative C.G. S.X.
0.18 5e-10 63 Zea mays Zm.4339.1.A1_at AI711931 - - 1e+0 At1g47410 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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