Gene omics information

Query gene ID	Contig12308_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig12308_at	Contig12308	-	-	1e-5	At3g23530	cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative	S.X.	H.G.	Please select
0.60	77.3	Contig15213_at	Contig15213	-	-	1e-1	At4g27745	-	S.X.	H.G.	Please select
0.55	72.0	Contig5857_at	Contig5857	-	-	2e-1	At1g02965	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig10520_s_at	Contig10520	-	-	3e-1	At4g39990	RABA4B (RAB GTPASE HOMOLOG A4B)	S.X.	H.G.	Please select
0.35	45.1	Contig12493_at	Contig12493	-	-	5e-8	At1g54115	CCX4 (CATION CALCIUM EXCHANGER 4)	S.X.	H.G.	Please select
0.20	21.1	Contig12984_at	Contig12984	-	-	3e-1	At3g17611	ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.7	99.7	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
17.0	99.6	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
15.6	99.6	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
13.4	99.4	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
12.9	99.4	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
12.4	99.4	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
12.1	99.3	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.2	99.2	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.9	99.2	GSM160744	drought control rep2	GSE6990	Barley drought stress
10.9	99.2	GSM130799	control, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	1e-149	529	rbah35f01_s_at	rbah35f01	-	-	1e+0	At5g56920	-	C.G.	S.X.	Please select
0.35	3e-48	192	Contig9601_s_at	Contig9601	-	-	1e-9	At3g23530	cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative	C.G.	S.X.	Please select
0.32	2e-43	176	Contig9600_at	Contig9600	-	-	3e-3	At3g23480	cyclopropane fatty acid synthase-related	C.G.	S.X.	Please select
0.31	4e-35	149	Contig15584_at	Contig15584	-	-	1e-4	At3g23480	cyclopropane fatty acid synthase-related	C.G.	S.X.	Please select
0.01	2e+0	34	Contig7605_s_at	Contig7605	-	-	5e-10	At2g25280	-	C.G.	S.X.	Please select
0.01	2e+0	34	Contig18039_at	Contig18039	-	-	6e-3	At3g17160	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig7237_at	Contig7237	-	-	1e-1	At3g42180	catalytic/ transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.01	2e+0	34	Contig5157_at	Contig5157	-	-	2e-29	At3g11830	chaperonin, putative	C.G.	S.X.	Please select
0.02	6e+0	32	HK01E08r_s_at	HK01E08r	-	-	4e+0	At2g27340	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	1e-5	52	Arabidopsis thaliana	At3g23530	821932	cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative	F:cyclopropane-fatty-acyl-phospholipid synthase activity, electron carrier activity, oxidoreductase activity;P:lipid biosynthetic process;C:endomembrane system;OBFPMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	GmaAffx.64223.1.S1_at	BI944671	-	-	2e-1	At4g07825	unknown protein	C.G.	S.X.	Please select
0.53	5e-99	363	Oryza sativa	Os07g0474600	AK111684.1	-	Cyclopropane-fatty-acyl-phospholipid synthasefamily protein	3e-3	At3g23530	cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	5e-9	63	Populus trichocarpa	PtpAffx.120213.1.S1_at	CX658857	hypothetical protein	-	5e-14	At3g23530	cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	0	1409	Triticum aestivum	Ta.7943.1.S1_at	CK159209	-	-	1e-2	At3g23530	cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1615941_at	BQ792716	hypothetical protein LOC100266013	-	3e-16	At4g33360	terpene cyclase/mutase-related	C.G.	S.X.	Please select
0.02	3e-1	36	Zea mays	Zm.9252.1.A1_at	BM267610	hypothetical protein LOC100217285	-	2e+1	At4g08290	nodulin MtN21 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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