CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig12297_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig12297_at Contig12297 - - 1e+0 At3g13190 myosin heavy chain-related S.X. H.G.
0.69 85.5 Contig7382_s_at Contig7382 - - 2e-13 At1g43670 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative S.X. H.G.
0.67 84.7 Contig7382_at Contig7382 - - 2e-13 At1g43670 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative S.X. H.G.
0.60 77.3 Contig14714_at Contig14714 P-type ATPase - 3e-68 At2g22950 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) S.X. H.G.
0.58 74.9 Contig12125_at Contig12125 - - 6e+0 At3g07522 unknown protein S.X. H.G.
0.56 74.3 Contig16755_at Contig16755 - - 6e+0 At4g33100 - S.X. H.G.
0.54 70.3 HVSMEb0005M08r2_at HVSMEb0005M08r2 - - 3e-28 At4g05050 UBQ11 (UBIQUITIN 11) S.X. H.G.
0.51 67.5 Contig11329_at Contig11329 - - 8e-3 At5g44570 unknown protein S.X. H.G.
0.49 63.7 Contig6625_at Contig6625 - - 5e-30 At5g13030 unknown protein S.X. H.G.
0.48 63.2 Contig4958_at Contig4958 - - 2e+0 At1g51560 FMN binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.0 99.4 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
9.5 99.0 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
8.6 98.8 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
8.1 98.7 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
7.6 98.6 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
7.2 98.5 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
6.6 98.2 GSM160831 7% SWC rep1 GSE6990 Barley drought stress
6.5 98.2 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
6.3 98.1 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
5.9 97.9 GSM213436 Barley seeds with P. aeruginosa PAO1 for 12hr GSE8618 P. aeruginosa virulent factor to barley
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.97 0 1120 Contig12297_s_at Contig12297 - - 1e+0 At3g13190 myosin heavy chain-related C.G. S.X.
0.59 0 850 Contig12298_at Contig12298 - - 3e-3 At4g32820 binding C.G. S.X.
0.03 5e-1 34 HV06I09u_at HV06I09u - - 4e+0 At3g57090 BIGYIN C.G. S.X.
0.02 2e+0 32 Contig10771_s_at Contig10771 - - 3e+0 At5g06043 unknown protein C.G. S.X.
0.03 2e+0 32 HF24C10r_at HF24C10r - - 1e+1 At5g53610 glycosyl hydrolase family protein 17 C.G. S.X.
0.01 2e+0 32 Contig5326_at Contig5326 - - 2e-11 At4g38600 KAK (KAKTUS) C.G. S.X.
0.02 2e+0 32 Contig13591_at Contig13591 - - 8e-47 At5g01230 FtsJ-like methyltransferase family protein C.G. S.X.
0.03 2e+0 32 Contig12545_at Contig12545 - - 1e-3 At3g27160 GHS1 (GLUCOSE HYPERSENSITIVE 1) C.G. S.X.
0.02 2e+0 32 Contig10841_s_at Contig10841 - - 2e+0 At5g46730 glycine-rich protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At3g13190 820509 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV - - - C.G. S.X.
0.03 2e+0 34 Glycine max HgAffx.18002.1.S1_at CB238692 - - 1e+1 At5g15008 unknown protein C.G. S.X.
0.09 3e-18 93 Oryza sativa Os03g0685800 AK058278.1 - Hypothetical protein 2e+0 At1g01810 unknown protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa Ptp.1483.2.A1_at DN489578 hypothetical protein - 4e+0 At2g25482 - C.G. S.X.
0.51 7e-70 264 Triticum aestivum Ta.12313.1.A1_at BQ172075 - - 9e-1 At3g50870 MNP (MONOPOLE) C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1622864_at BQ794135 hypothetical protein LOC100243993 - 6e+0 At5g08130 BIM1 C.G. S.X.
0.06 1e-1 36 Zea mays Zm.17255.1.A1_at CK144641 - - 6e+0 At2g46930 pectinacetylesterase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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