CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig12275_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 90.8 Contig12275_at Contig12275 - - 3e-3 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) S.X. H.G.
0.04 3.4 Contig6428_s_at Contig6428 - - 4e-8 At5g60540 PDX2 (PYRIDOXINE BIOSYNTHESIS 2) S.X. H.G.
0.04 3.4 Contig5293_at Contig5293 - - 2e-25 At4g39220 ATRER1A S.X. H.G.
0.03 2.6 Contig10636_at Contig10636 - - 1e-24 At3g58970 magnesium transporter CorA-like family protein S.X. H.G.
0.03 2.6 Contig5283_at Contig5283 - - 1e-2 At1g25280 AtTLP10 (TUBBY LIKE PROTEIN 10) S.X. H.G.
0.01 1.1 Contig9903_at Contig9903 - - 1e-2 At3g20500 PAP18 (PURPLE ACID PHOSPHATASE 18) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
38.9 99.9 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
30.6 99.9 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
29.3 99.9 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
25.0 99.8 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
17.9 99.7 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
17.4 99.6 GSM282022 Malting_day4_Merit_rep4 GSE11200 Expression data from malting barley seeds
15.8 99.6 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
15.0 99.5 GSM282025 Control_dryseed_Morex_rep1 GSE11200 Expression data from malting barley seeds
14.2 99.5 GSM282023 Malting_day4_Merit_rep3 GSE11200 Expression data from malting barley seeds
14.1 99.5 GSM282035 Malting_day4_Morex_rep1 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-14 79 Contig2403_at Contig2403 - - 8e-7 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.09 9e-8 57 Contig2402_s_at Contig2402 - - 2e-13 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.07 3e-4 46 Contig2401_at Contig2401 - - 1e-13 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.07 3e-4 46 Contig2404_at Contig2404 - - 1e-13 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.03 3e-4 46 Contig86_at Contig86 - - 3e-18 At5g60360 AALP (Arabidopsis aleurain-like protease) C.G. S.X.
0.02 5e-3 42 Contig12089_at Contig12089 - - 1e-13 At2g34860 EDA3 (embryo sac development arrest 3) C.G. S.X.
0.04 2e-2 40 Contig3900_at Contig3900 - - 5e-2 At2g27420 cysteine proteinase, putative C.G. S.X.
0.01 2e-2 40 Contig2916_at Contig2916 UDP-D-glucuronate decarboxylase - 1e-33 At2g47650 UXS4 (UDP-XYLOSE SYNTHASE 4) C.G. S.X.
0.02 8e-2 38 Contig9688_s_at Contig9688 - - 7e+0 At5g52970 thylakoid lumen 15.0 kDa protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-3 44 Arabidopsis thaliana At4g39090 830064 RD19 (RESPONSIVE TO DEHYDRATION 19) Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R–mediated resistance response. - - - C.G. S.X.
0.06 2e-11 71 Glycine max PsAffx.CL90Contig1_at PsAffx.CL90Contig1 - - 4e-3 At4g16190 cysteine proteinase, putative C.G. S.X.
0.59 2e-104 381 Oryza sativa Os07g0480900 AK063422.1 - Cysteine protease (Fragment) 8e-7 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.02 6e-2 40 Populus trichocarpa PtpAffx.224421.1.S1_at pmrna42928 - - 1e-7 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) C.G. S.X.
0.18 1e-30 135 Triticum aestivum Ta.5926.1.S1_at CD912379 - - 1e+1 At5g13470 unknown protein C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1616547_at BQ798895 hypothetical protein LOC100256265 - 5e-21 At5g23230 NIC2 (NICOTINAMIDASE 2) C.G. S.X.
0.06 3e-4 46 Zea mays Zm.456.1.S1_at AF019145.2 maize insect resistance1 - 5e-2 At4g11320 cysteine proteinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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