Gene omics information

Query gene ID	Contig12262_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig12262_at	Contig12262	-	-	2e-1	At5g23405	high mobility group (HMG1/2) family protein	S.X.	H.G.	Please select
0.67	84.7	Contig1206_s_at	Contig1206	-	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	S.X.	H.G.	Please select
0.67	84.7	Contig5409_at	Contig5409	-	-	3e-18	At3g02580	STE1 (STEROL 1)	S.X.	H.G.	Please select
0.50	66.9	Contig7155_at	Contig7155	-	-	3e-1	At1g65520	ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1)	S.X.	H.G.	Please select
0.38	49.5	Contig19041_at	Contig19041	-	-	5e+0	At4g22850	-	S.X.	H.G.	Please select
0.33	42.6	Contig2046_at	Contig2046	-	-	5e+0	At1g60815	RALFL7 (RALF-LIKE 7)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.7	99.3	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
10.7	99.2	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
10.6	99.2	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
10.0	99.1	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
7.5	98.6	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
7.4	98.5	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
6.3	98.1	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
4.9	97.1	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.9	97.1	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.9	97.1	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-2	38	Contig4204_at	Contig4204	-	-	1e-4	At5g48580	FKBP15-2	C.G.	S.X.	Please select
0.02	1e+0	34	Contig3783_at	Contig3783	-	-	4e-1	At2g30766	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig3773_at	Contig3773	-	-	5e+0	Atmg00870	-	C.G.	S.X.	Please select
0.02	1e+0	34	HM09F12r_s_at	HM09F12r	-	-	9e-1	At2g44400	DC1 domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	HM09F12r_at	HM09F12r	-	-	9e-1	At2g44400	DC1 domain-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig13874_at	Contig13874	-	-	3e+0	At4g16880	disease resistance protein-related	C.G.	S.X.	Please select
0.01	1e+0	34	Contig5361_at	Contig5361	-	-	3e+0	At4g29103	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig4255_s_at	Contig4255	-	-	2e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig3783_s_at	Contig3783	-	-	4e-1	At2g30766	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	Arabidopsis thaliana	At5g23405	832406	high mobility group (HMG1/2) family protein	F:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+1	32	Glycine max	PsAffx.CL2Contig15_at	PsAffx.CL2Contig15	-	-	8e-7	At4g31985	60S ribosomal protein L39 (RPL39C)	C.G.	S.X.	Please select
0.06	4e-4	48	Oryza sativa	Os11g0550500	AK067546.1	-	LZ-NBS-LRR class RGA	7e+0	At5g66440	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	9e-1	36	Populus trichocarpa	PtpAffx.221177.1.S1_at	pmrna37843	hypothetical protein	-	7e-1	At2g23210	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	8e-7	56	Triticum aestivum	Ta.257.1.S1_at	AF149114.1	stripe rust resistance protein Yr10	-	1e+0	At5g67500	VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)	C.G.	S.X.	Please select
0.03	8e-1	34	Vitis vinifera	1606823_at	CD802490	-	-	4e-1	At1g48980	oxidoreductase	C.G.	S.X.	Please select
0.02	5e+0	32	Zea mays	Zm.4106.1.S1_at	BQ048471	-	-	1e+1	At4g29035	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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