CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig12129_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 87.1 Contig12129_at Contig12129 - - 2e-14 At4g30020 subtilase family protein S.X. H.G.
0.80 92.5 Contig8892_at Contig8892 flowering time control protein - 4e-13 At4g16280 FCA S.X. H.G.
0.71 87.1 Contig18436_s_at Contig18436 - - 1e+0 At2g18000 TAF14 (TBP-associated factor 14) S.X. H.G.
0.67 84.7 Contig19791_at Contig19791 - - 3e-1 At4g06534 unknown protein S.X. H.G.
0.43 56.4 Contig18856_at Contig18856 - - 2e-6 At5g04940 SUVH1 (SU(VAR)3-9 HOMOLOG 1) S.X. H.G.
0.17 16.9 Contig15181_at Contig15181 - - 5e+0 At5g57170 macrophage migration inhibitory factor family protein / MIF family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.2 99.5 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
13.4 99.4 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
10.1 99.1 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.9 99.1 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.9 99.1 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
8.7 98.9 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.8 98.6 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.4 98.5 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.9 98.3 GSM282020 Malting_day4_Legacy_rep 3 GSE11200 Expression data from malting barley seeds
6.8 98.3 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 34 Contig9246_at Contig9246 - - 6e-1 At3g17490 F-box family protein C.G. S.X.
0.01 2e+0 34 Contig8691_at Contig8691 - - 1e-5 At3g12760 - C.G. S.X.
0.01 6e+0 32 Contig12756_at Contig12756 - - 1e-21 At2g34090 MEE18 (maternal effect embryo arrest 18) C.G. S.X.
0.01 6e+0 32 HY02H13u_s_at HY02H13u - - 1e+0 At3g47410 unknown protein C.G. S.X.
0.01 6e+0 32 HY02H13u_at HY02H13u - - 1e+0 At3g47410 unknown protein C.G. S.X.
0.01 6e+0 32 Contig16695_at Contig16695 - - 2e-2 At5g20900 JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12) C.G. S.X.
0.01 6e+0 32 Contig24029_at Contig24029 - - 5e+0 At5g43490 unknown protein C.G. S.X.
0.01 6e+0 32 Contig18670_at Contig18670 - - 6e-4 At3g26850 - C.G. S.X.
0.01 6e+0 32 Contig15118_at Contig15118 - - 7e-4 At1g22210 trehalose-6-phosphate phosphatase, putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-14 81 Arabidopsis thaliana At4g30020 829125 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAM - - - C.G. S.X.
0.07 1e-9 65 Glycine max Gma.7222.2.S1_at AW759469 - - 8e-18 At4g30020 subtilase family protein C.G. S.X.
0.45 0 950 Oryza sativa Os06g0700000 AK102835.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 1e-53 At2g19170 SLP3 C.G. S.X.
0.13 1e-22 109 Populus trichocarpa PtpAffx.225099.1.S1_at pmrna44197 hypothetical protein - 3e-109 At4g30020 subtilase family protein C.G. S.X.
0.82 0 1955 Triticum aestivum Ta.29457.1.S1_at CK205969 - - 1e-18 At4g30020 subtilase family protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1622276_at CF207704 - - 4e+0 At5g47320 RPS19 (RIBOSOMAL PROTEIN S19) C.G. S.X.
0.46 0 660 Zea mays Zm.10200.1.A1_at BM379455 hypothetical protein LOC100274487 - 4e-6 At4g30020 subtilase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage