Gene omics information

Query gene ID Contig1210_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8694.8Contig1210_atContig1210--2e-16At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)S.X.H.G.
0.3240.3Contig6590_atContig6590--8e-3At1g21410SKP2AS.X.H.G.
0.1919.6Contig5466_atContig5466--3e-4At5g60460sec61beta family proteinS.X.H.G.
0.1919.6HU02E04u_s_atHU02E04u--8e-5At3g27720zinc finger protein-relatedS.X.H.G.
0.1716.9Contig10812_atContig10812--2e+0At1g54410dehydrin family proteinS.X.H.G.
0.1514.1Contig8595_atContig8595--2e-13At3g14930HEME1S.X.H.G.
0.1514.1Contig17036_atContig17036--4e-7At3g27720zinc finger protein-relatedS.X.H.G.
0.1514.1Contig10043_atContig10043--8e-38At5g13280AK-LYS1 (ASPARTATE KINASE 1)S.X.H.G.
0.1210.4Contig11511_atContig11511--8e-3At5g46030unknown proteinS.X.H.G.
0.108.4Contig9110_atContig9110--2e-1At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
9.899.1GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
9.399.0GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.998.3GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.697.7GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barley
5.397.4GSM1611487% SWC rep3GSE6990Barley drought stress
4.796.9GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.496.6GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
4.296.3GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.296.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
4.296.3GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.340793Contig1203_atContig1203--9e-33At5g56010HSP81-3C.G.S.X.
0.472e-148525Contig4092_atContig4092--1e-2At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.011e-138Contig14176_atContig14176--5e-1At1g16210unknown proteinC.G.S.X.
0.021e-138Contig5528_atContig5528--2e-1At1g21530AMP-binding protein, putativeC.G.S.X.
0.014e-136Contig11632_atContig11632--4e-2At2g37080myosin heavy chain-relatedC.G.S.X.
0.014e-136Contig6759_atContig6759--2e-5At3g55980SZF1 (SALT-INDUCIBLE ZINC FINGER 1)C.G.S.X.
0.022e+034Contig17699_atContig17699--2e-11At5g40150peroxidase, putativeC.G.S.X.
0.012e+034Contig16000_atContig16000--4e-1At1g66180aspartyl protease family proteinC.G.S.X.
0.022e+034Contig17296_atContig17296--4e+0At5g02650unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.282e-1687Arabidopsis thalianaAt5g53120835392SPDS3 (SPERMIDINE SYNTHASE 3)encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.---C.G.S.X.
0.172e-242Glycine maxGmaAffx.87908.1.S1_atBM270150--2e-23At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.530644Oryza sativaOs06g0528600AB098063.1-Spermidine synthase 1 (EC 2.5.1.16) (Putrescineaminopropyltransferase 1) (SPDSY 1)1e-8At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.142e-20101Populus trichocarpaPtp.7547.1.S1_atBI120806hypothetical protein-3e-29At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.8201164Triticum aestivumTa.9393.2.S1_s_atCD933620--5e-24At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.052e-859Vitis vinifera1609980_a_atCA818363spermine synthase-4e+0At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.530954Zea maysZm.6006.1.A1_atAY110392.1spermidine synthase 1-7e-14At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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