CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig12085_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 69.7 Contig12085_at Contig12085 - - 1e-2 At5g63260 zinc finger (CCCH-type) family protein S.X. H.G.
0.60 77.3 Contig9075_s_at Contig9075 - - 1e-1 At5g59990 - S.X. H.G.
0.57 74.9 HV_CEa0003B14r2_at HV_CEa0003B14r2 - - 8e-1 At4g24026 unknown protein S.X. H.G.
0.55 72.0 Contig13704_at Contig13704 - - 2e+0 At5g56100 glycine-rich protein / oleosin S.X. H.G.
0.46 61.0 Contig20962_at Contig20962 - - 9e-9 At2g33820 MBAC1 S.X. H.G.
0.38 49.5 Contig19683_at Contig19683 - - 1e+0 At3g24820 BSD domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.2 99.2 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.8 98.9 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.6 98.2 GSM261076 Albina e-16 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3 98.1 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
4.8 97.0 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.8 97.0 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
4.7 96.9 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.7 96.9 GSM282035 Malting_day4_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.7 96.9 GSM146361 Golden Promise Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-1 38 Contig8027_at Contig8027 - - 8e-1 At1g02420 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 1e-1 38 Contig24755_at Contig24755 - - 2e-6 At4g33060 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein C.G. S.X.
0.01 2e+0 34 Contig2906_at Contig2906 - - 3e+0 At1g04985 unknown protein C.G. S.X.
0.01 2e+0 34 Contig26529_at Contig26529 - - 2e-1 At5g47550 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.01 2e+0 34 Contig6601_at Contig6601 - - 3e-9 At1g29550 eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative C.G. S.X.
0.01 7e+0 32 Contig4592_s_at Contig4592 - - 3e-22 At4g23650 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) C.G. S.X.
0.01 7e+0 32 HVSMEc0005E20f_at HVSMEc0005E20f - - 8e-174 Atmg00520 - C.G. S.X.
0.01 7e+0 32 Contig8819_at Contig8819 - - 2e+0 At4g19270 unknown protein C.G. S.X.
0.01 7e+0 32 Contig6576_at Contig6576 - - 6e-6 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-2 42 Arabidopsis thaliana At5g63260 836446 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PMFO - - - C.G. S.X.
0.02 8e-2 40 Glycine max GmaAffx.88815.1.A1_s_at CK605868 methionine synthase - 2e-113 At5g17920 ATMS1 C.G. S.X.
0.44 6e-59 230 Oryza sativa Os12g0278800 AK121774.1 - U2 auxiliary factor small subunit family protein 1e-3 At5g46780 VQ motif-containing protein C.G. S.X.
0.02 1e-3 46 Populus trichocarpa PtpAffx.149742.1.A1_at CV230013 hypothetical protein - 1e+0 At1g04990 zinc finger (CCCH-type) family protein C.G. S.X.
0.41 4e-179 628 Triticum aestivum Ta.12878.1.S1_at CA711161 - - 3e-1 At3g47295 unknown protein C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1618952_at CF405185 - - 7e-1 At4g18890 brassinosteroid signalling positive regulator-related C.G. S.X.
0.44 2e-39 163 Zea mays Zm.6881.1.A1_at AW066811 hypothetical protein LOC100272717 /// zinc finger CCCH type domain-containing protein ZFN-like 6 - 4e-2 At4g17240 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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