Gene omics information

Query gene ID	Contig1206_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig1206_s_at	Contig1206	-	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	S.X.	H.G.	Please select
0.53	69.7	Contig12262_at	Contig12262	-	-	2e-1	At5g23405	high mobility group (HMG1/2) family protein	S.X.	H.G.	Please select
0.44	58.9	Contig7155_at	Contig7155	-	-	3e-1	At1g65520	ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1)	S.X.	H.G.	Please select
0.40	53.1	Contig2046_at	Contig2046	-	-	5e+0	At1g60815	RALFL7 (RALF-LIKE 7)	S.X.	H.G.	Please select
0.40	53.1	Contig14685_at	Contig14685	-	-	5e+0	At3g52525	OFP6 (OVATE FAMILY PROTEIN 6)	S.X.	H.G.	Please select
0.40	53.1	Contig5409_at	Contig5409	-	-	3e-18	At3g02580	STE1 (STEROL 1)	S.X.	H.G.	Please select
0.33	42.6	Contig13687_at	Contig13687	-	-	4e+0	At5g12880	proline-rich family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.0	99.7	GSM363460	Control (C) - rep1	GSE14521	Late response to boron toxicity in barley leaves
15.5	99.6	GSM68889	3 h control replicate 1	GSE3097	Barley1 salinity stress study
15.3	99.6	GSM68901	27 h control replicate 1	GSE3097	Barley1 salinity stress study
11.1	99.2	GSM68893	3 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
8.7	98.9	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
8.2	98.7	GSM68905	27 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
8.0	98.7	GSM363462	Control (C) - rep3	GSE14521	Late response to boron toxicity in barley leaves
7.6	98.6	GSM68894	3 h salt stressed replicate 3	GSE3097	Barley1 salinity stress study
7.4	98.5	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.1	98.4	GSM68891	3 h control replicate 3	GSE3097	Barley1 salinity stress study

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.71	0	1580	Contig1204_s_at	Contig1204	cytosolic heat shock protein 90	-	0	At5g56010	HSP81-3	C.G.	S.X.	Please select
0.47	0	1094	Contig1207_at	Contig1207	-	-	2e-55	At5g56000	heat shock protein 81-4 (HSP81-4)	C.G.	S.X.	Please select
0.19	2e-93	343	Contig1213_at	Contig1213	-	-	2e-21	At5g56010	HSP81-3	C.G.	S.X.	Please select
0.20	7e-84	311	rbags1d24_at	rbags1d24	-	-	7e-20	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select
0.14	6e-69	262	Contig1205_s_at	Contig1205	-	-	3e-10	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select
0.17	1e-63	244	HW08H22u_at	HW08H22u	-	-	2e+0	At5g27495	ion channel inhibitor	C.G.	S.X.	Please select
0.09	2e-53	210	Contig1203_at	Contig1203	-	-	9e-33	At5g56010	HSP81-3	C.G.	S.X.	Please select
0.10	2e-10	67	Contig91_at	Contig91	-	-	2e-67	At4g24190	SHD (SHEPHERD)	C.G.	S.X.	Please select
0.03	4e-2	40	Contig71_s_at	Contig71	GRP94 homologue	-	1e-9	At4g24190	SHD (SHEPHERD)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.72	0	850	Arabidopsis thaliana	At5g56000	835698	heat shock protein 81-4 (HSP81-4)	F:unfolded protein binding, ATP binding;P:protein folding;C:cytosol, apoplast, cell wall, nucleus, plasma membrane;OMBFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.53	3e-147	523	Glycine max	Gma.17525.1.S1_at	BG839191	-	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	C.G.	S.X.	Please select
0.71	0	1396	Oryza sativa	Os09g0482100	AB111810.1	-	Heat shock protein 82	0	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.52	2e-86	321	Populus trichocarpa	PtpAffx.2288.1.S1_at	CV271807	hypothetical protein	-	0	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.85	0	2155	Triticum aestivum	Ta.217.1.S1_x_at	U55859.1	heat shock protein 80	-	0	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select
0.48	6e-179	626	Vitis vinifera	1618009_at	CD714666	similar to heat shock protein 90	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	C.G.	S.X.	Please select
0.71	0	1522	Zea mays	Zm.16525.2.S1_a_at	CF633541	deoxy xylulose synthase 2	-	0	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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