Gene omics information

Query gene ID	Contig1204_s_at
Gene name	cytosolic heat shock protein 90
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.7	Contig1204_s_at	Contig1204	cytosolic heat shock protein 90	-	0	At5g56010	HSP81-3	S.X.	H.G.	Please select
0.53	69.7	Contig8858_at	Contig8858	-	-	7e-20	At5g01010	-	S.X.	H.G.	Please select
0.47	62.2	Contig8990_at	Contig8990	-	-	3e-10	At2g02800	APK2B (PROTEIN KINASE 2B)	S.X.	H.G.	Please select
0.46	61.0	Contig11041_at	Contig11041	-	-	1e+0	At3g08940	LHCB4.2 (light harvesting complex PSII)	S.X.	H.G.	Please select
0.40	53.1	Contig11168_at	Contig11168	-	-	1e-15	At5g12480	CPK7 (calmodulin-domain protein kinase 7)	S.X.	H.G.	Please select
0.33	42.6	Contig6254_at	Contig6254	-	-	3e+0	At2g37950	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.30	37.0	Contig6535_s_at	Contig6535	-	-	5e-34	At2g42500	PP2A-4	S.X.	H.G.	Please select
0.27	32.1	Contig16898_at	Contig16898	-	-	1e-1	At1g44608	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.3	98.8	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.8	98.6	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
7.5	98.6	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.0	98.4	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.7	98.3	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.2	98.0	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.0	97.9	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
5.7	97.7	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
5.7	97.7	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.71	0	1574	Contig1206_s_at	Contig1206	-	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	C.G.	S.X.	Please select
0.30	0	739	rbags1d24_at	rbags1d24	-	-	7e-20	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select
0.28	5e-162	571	Contig1207_at	Contig1207	-	-	2e-55	At5g56000	heat shock protein 81-4 (HSP81-4)	C.G.	S.X.	Please select
0.17	6e-103	375	HS05F01u_x_at	HS05F01u	-	-	2e+0	At5g66090	unknown protein	C.G.	S.X.	Please select
0.11	1e-100	367	Contig1203_at	Contig1203	-	-	9e-33	At5g56010	HSP81-3	C.G.	S.X.	Please select
0.15	2e-90	333	HS18A21u_x_at	HS18A21u	-	-	7e+0	At5g66090	unknown protein	C.G.	S.X.	Please select
0.17	3e-89	329	HT12H07u_x_at	HT12H07u	-	-	8e+0	At5g64552	CPuORF22 (Conserved peptide upstream open reading frame 22)	C.G.	S.X.	Please select
0.21	2e-74	280	Contig1213_at	Contig1213	-	-	2e-21	At5g56010	HSP81-3	C.G.	S.X.	Please select
0.13	3e-64	246	Contig1205_s_at	Contig1205	-	-	3e-10	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.72	0	1082	Arabidopsis thaliana	At5g56010	835699	HSP81-3	a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.56	0	938	Glycine max	Gma.17525.1.S1_at	BG839191	-	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	C.G.	S.X.	Please select
0.73	0	1491	Oryza sativa	Os09g0482100	AB111810.1	-	Heat shock protein 82	0	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.55	0	963	Populus trichocarpa	Ptp.1433.1.S1_at	CV237152	hypothetical protein	-	0	At5g56010	HSP81-3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.83	0	2426	Triticum aestivum	Ta.2502.1.S1_a_at	BJ241868	HSP80-2	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	C.G.	S.X.	Please select
0.49	0	783	Vitis vinifera	1618009_at	CD714666	similar to heat shock protein 90	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	C.G.	S.X.	Please select
0.70	0	1546	Zea mays	Zm.16525.2.S1_a_at	CF633541	deoxy xylulose synthase 2	-	0	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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