CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig12027_at

Gene name ORG4

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 80.3 Contig12027_at Contig12027 ORG4 - 2e-3 At2g06010 ORG4 (OBP3-RESPONSIVE GENE 4) S.X. H.G.
0.86 94.8 Contig8468_at Contig8468 - - 1e-12 At4g33050 EDA39 (embryo sac development arrest 39) S.X. H.G.
0.78 91.2 HR01A09u_at HR01A09u - - 2e+0 At5g55000 FIP2 S.X. H.G.
0.78 91.2 Contig11154_at Contig11154 - - 1e-15 At5g66210 CPK28 S.X. H.G.
0.67 84.7 Contig6325_at Contig6325 - - 4e-1 At5g25490 zinc finger (Ran-binding) family protein S.X. H.G.
0.55 72.0 Contig11957_at Contig11957 - - 5e-2 At3g48280 CYP71A25 S.X. H.G.
0.55 72.0 HY02G07u_at HY02G07u - - 4e+0 At2g28420 lactoylglutathione lyase family protein / glyoxalase I family protein S.X. H.G.
0.44 58.9 Contig24268_at Contig24268 - - 2e+0 At5g57345 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.1 99.8 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
25.1 99.8 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
16.9 99.6 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
15.6 99.6 GSM419981 Seed_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
15.6 99.6 GSM440975 Control seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress
14.3 99.5 GSM440980 Stressed seed_Rep3 GSE17669 Gene expression in the barley spike during drought stress
14.1 99.5 GSM419983 Seed_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
14.1 99.5 GSM440977 Control seed_Rep3 GSE17669 Gene expression in the barley spike during drought stress
13.5 99.5 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
11.2 99.2 GSM282025 Control_dryseed_Morex_rep1 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-2 38 Contig15714_at Contig15714 - - 2e-6 At2g48010 RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3) C.G. S.X.
0.01 5e-2 38 Contig5213_at Contig5213 - - 2e-11 At5g61020 ECT3 C.G. S.X.
0.02 5e-2 38 Contig13412_at Contig13412 - - 1e+1 At5g67640 unknown protein C.G. S.X.
0.01 2e-1 36 Contig4603_at Contig4603 - - 3e+0 At5g28630 glycine-rich protein C.G. S.X.
0.01 2e-1 36 Contig2820_at Contig2820 - - 2e-7 At1g79920 ATP binding C.G. S.X.
0.02 2e-1 36 Contig4604_s_at Contig4604 - - 2e+0 At5g28630 glycine-rich protein C.G. S.X.
0.01 2e-1 36 Contig4003_at Contig4003 - - 4e-12 At5g47770 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) C.G. S.X.
0.02 8e-1 34 Contig9471_at Contig9471 - - 6e-3 At1g09645 unknown protein C.G. S.X.
0.02 8e-1 34 Contig10221_at Contig10221 - - 6e-1 At4g33520 PAA1 (P-TYPE ATP-ASE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-3 44 Arabidopsis thaliana At2g06010 815155 ORG4 (OBP3-RESPONSIVE GENE 4) encodes a novel protein whose expression level is induced in lines overexpressing salicylic-acid (SA)-inducible Arabidopsis DNA binding with one finger (Dof) transcription factor, called OBF-binding protein 3. - - - C.G. S.X.
0.07 1e-1 38 Glycine max GmaAffx.75937.1.S1_at AW706450 - - 3e-19 At2g06010 ORG4 (OBP3-RESPONSIVE GENE 4) C.G. S.X.
0.62 0 664 Oryza sativa Os04g0446200 9632.m03508 - Conserved hypothetical protein 1e-4 At2g06010 ORG4 (OBP3-RESPONSIVE GENE 4) C.G. S.X.
0.13 1e-1 38 Populus trichocarpa PtpAffx.216492.1.S1_x_at pmrna31283 hypothetical protein - 3e-16 At2g06010 ORG4 (OBP3-RESPONSIVE GENE 4) C.G. S.X.
0.85 0 1037 Triticum aestivum Ta.1089.1.S1_a_at BQ842113 - - 2e-3 At2g06010 ORG4 (OBP3-RESPONSIVE GENE 4) C.G. S.X.
0.03 2e-3 42 Vitis vinifera 1619026_s_at CB349994 hypothetical protein LOC100265941 - 3e-10 At3g20800 rcd1-like cell differentiation protein, putative C.G. S.X.
0.03 2e-1 36 Zea mays ZmAffx.716.1.A1_at AI739804 - - 2e-1 At4g03240 FH (FRATAXIN HOMOLOG) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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