Gene omics information

Query gene ID	Contig11985_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig11985_at	Contig11985	-	-	3e-2	At5g18310	unknown protein	S.X.	H.G.	Please select
0.83	94.0	Contig16285_at	Contig16285	-	-	8e-2	At4g31390	ABC1 family protein	S.X.	H.G.	Please select
0.67	84.7	HZ01L11u_at	HZ01L11u	-	-	3e+0	At4g26240	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig8647_s_at	Contig8647	-	-	4e-19	At5g43930	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.67	84.7	Contig8003_at	Contig8003	-	-	2e+0	At5g22100	RNA cyclase family protein	S.X.	H.G.	Please select
0.61	78.7	Contig3729_at	Contig3729	-	-	7e+0	At5g60560	F-box family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.8	99.8	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
24.2	99.8	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
19.0	99.7	GSM261062	Xantha s-46 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
18.6	99.7	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.6	99.2	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.4	99.2	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.6	98.6	GSM398267	HS41-1_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.3	98.1	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.7	97.7	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM261056	Xantha b-12 Cotrol rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-2	40	Contig3718_s_at	Contig3718	-	-	2e-9	At3g25690	CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)	C.G.	S.X.	Please select
0.02	1e-2	40	Contig4588_at	Contig4588	-	-	2e-73	At3g62120	tRNA synthetase class II (G, H, P and S) family protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig3724_at	Contig3724	-	-	2e-7	At4g35450	AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)	C.G.	S.X.	Please select
0.04	2e-1	36	HU08I01u_at	HU08I01u	-	-	6e-1	At3g43150	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig21486_at	Contig21486	-	-	5e-3	At5g55430	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	36	HF21N04r_at	HF21N04r	-	-	2e+0	At4g19150	ankyrin repeat family protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig23655_at	Contig23655	-	-	5e+0	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	C.G.	S.X.	Please select
0.03	2e-1	36	Contig15837_at	Contig15837	-	-	5e+0	At5g03440	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig12981_at	Contig12981	-	-	1e-1	At5g60960	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-2	40	Arabidopsis thaliana	At5g18310	831949	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	4e-5	50	Glycine max	Gma.17638.1.S1_at	BG510363	-	-	3e-9	At5g57180	CIA2 (CHLOROPLAST IMPORT APPARATUS 2)	C.G.	S.X.	Please select
0.28	2e-81	303	Oryza sativa	Os02g0148000	AK120401.1	-	Zinc finger protein	1e+0	At4g27810	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e-3	42	Populus trichocarpa	PtpAffx.249.448.S1_s_at	BU824500	-	-	1e-6	At1g54410	dehydrin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.24	8e-49	194	Triticum aestivum	Ta.15513.1.S1_at	CA485206	-	-	3e+0	At4g31700	RPS6 (RIBOSOMAL PROTEIN S6)	C.G.	S.X.	Please select
0.04	1e-1	36	Vitis vinifera	1620821_at	CD008586	hypothetical protein LOC100242952	-	9e-14	At5g15900	unknown protein	C.G.	S.X.	Please select
0.22	1e-33	143	Zea mays	Zm.15248.1.A1_at	BM074646	-	-	1e+0	At5g52420	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage