CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig11946_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 66.9 Contig11946_at Contig11946 - - 2e+0 At1g49950 DNA-binding protein, putative S.X. H.G.
0.83 94.0 Contig13318_at Contig13318 - - 1e-2 At3g59010 pectinesterase family protein S.X. H.G.
0.80 92.5 Contig5969_at Contig5969 - - 7e-4 At1g64970 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) S.X. H.G.
0.77 90.8 Contig10453_at Contig10453 - - 9e-1 At5g19485 transferase S.X. H.G.
0.63 80.3 Contig5966_at Contig5966 - - 9e-2 At4g33360 terpene cyclase/mutase-related S.X. H.G.
0.50 66.9 Contig5763_s_at Contig5763 C-8,7-sterol isomerase - 2e+0 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
55.4 100.0 GSM311261 kara_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
52.3 100.0 GSM311259 kara_with_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
43.7 99.9 GSM311265 kara_without_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
43.2 99.9 GSM311262 kara_without_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
36.7 99.9 GSM311260 kara_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
33.1 99.9 GSM311263 kara_without_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
17.5 99.6 GSM363463 5 mM B(OH)3 treatment (5B) - rep1 GSE14521 Late response to boron toxicity in barley leaves
13.7 99.5 GSM363467 10 mM B(OH)3 treatment (10B) - rep2 GSE14521 Late response to boron toxicity in barley leaves
9.6 99.0 GSM363464 5 mM B(OH)3 treatment (5B) - rep2 GSE14521 Late response to boron toxicity in barley leaves
9.2 99.0 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 1e-172 605 Mla7_orf_3pri12_x_at Mla7_orf_3pri12 Mla7 protein - 6e-1 At1g80133 unknown protein C.G. S.X.
0.17 7e-149 525 Mla13_orf_3pr_x_at Mla13_orf_3pr - - 2e+0 At1g80133 unknown protein C.G. S.X.
0.37 2e-130 464 Mla6_orf_3pri12_s_at Mla6_orf_3pri12 Mla7 protein - 6e-1 At4g24620 PGI1 (PHOSPHOGLUCOSE ISOMERASE 1) C.G. S.X.
0.33 9e-127 452 Franka_3pri12_s_at Franka_3pri12 - - 2e+0 At4g25700 BETA-OHASE 1 (BETA-HYDROXYLASE 1) C.G. S.X.
0.13 9e-127 452 Contig7225_at Contig7225 - - 2e+0 At5g45240 transmembrane receptor C.G. S.X.
0.19 2e-103 375 AY009939_CDS-2_s_at AY009939_CDS-2 - - 4e-1 At3g43630 nodulin, putative C.G. S.X.
0.35 2e-103 375 Mla1_orf_3pri12_s_at Mla1_orf_3pri12 - - 1e-1 At3g43630 nodulin, putative C.G. S.X.
0.35 2e-103 375 Mla1_orf_3pri12_at Mla1_orf_3pri12 - - 1e-1 At3g43630 nodulin, putative C.G. S.X.
0.20 3e-102 371 Contig11945_s_at Contig11945 - - 1e+0 At1g13450 DNA binding protein GT-1 C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At1g49950 841418 DNA-binding protein, putative Encodes a telomeric DNA binding protein. In vitro, an N-terminal Myb domain enables it to interact with double-stranded telomeric repeats. - - - C.G. S.X.
0.03 5e-1 36 Glycine max PsAffx.C151000029_s_at PsAffx.C151000029 - - 3e+0 At4g23090 unknown protein C.G. S.X.
0.02 7e-1 36 Oryza sativa Os03g0782200 AK069119.1 - Conserved hypothetical protein 1e+1 At5g53588 CPuORF50 (Conserved peptide upstream open reading frame 50) C.G. S.X.
0.03 8e+0 32 Populus trichocarpa PtpAffx.52291.1.A1_at CK090724 - - 6e-1 At3g29450 - C.G. S.X.
0.18 1e-74 280 Triticum aestivum Ta.14603.1.S1_at AF538039.2 Mal-like protein - 1e+0 At5g45240 transmembrane receptor C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1617695_at CF514710 - - 1e+0 At1g28290 AGP31 (arabinogalactan-protein 31) C.G. S.X.
0.02 6e-1 34 Zea mays Zm.9371.2.S1_a_at CF631830 hypothetical protein LOC100275410 - 5e-1 At1g25420 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage