Gene omics information

Query gene ID	Contig11919_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	63.2	Contig11919_at	Contig11919	-	-	2e+0	At3g45275	-	S.X.	H.G.	Please select
0.73	88.7	Contig4900_at	Contig4900	-	-	3e-12	At1g04760	ATVAMP726	S.X.	H.G.	Please select
0.67	84.7	Contig9269_s_at	Contig9269	-	-	2e+0	At2g19730	60S ribosomal protein L28 (RPL28A)	S.X.	H.G.	Please select
0.38	49.5	Contig11704_at	Contig11704	-	-	1e-4	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	S.X.	H.G.	Please select
0.36	47.1	Contig13545_at	Contig13545	-	-	1e-20	At2g38730	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	S.X.	H.G.	Please select
0.35	45.1	Contig24710_at	Contig24710	-	-	2e-36	At3g45180	ubiquitin family protein	S.X.	H.G.	Please select
0.33	42.6	Contig14376_at	Contig14376	-	-	4e-10	At5g51720	unknown protein	S.X.	H.G.	Please select
0.29	35.5	Contig20289_at	Contig20289	-	-	9e-1	At1g77746	unknown protein	S.X.	H.G.	Please select
0.28	35.5	Contig497_s_at	Contig497	-	-	6e-6	At5g38420	ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
148.5	100.0	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
90.6	100.0	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
30.9	99.9	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
22.1	99.8	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
18.1	99.7	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
13.9	99.5	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.7	98.9	GSM363464	5 mM B(OH)3 treatment (5B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
7.3	98.5	GSM363462	Control (C) - rep3	GSE14521	Late response to boron toxicity in barley leaves
7.2	98.5	GSM363460	Control (C) - rep1	GSE14521	Late response to boron toxicity in barley leaves
6.7	98.3	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	0	946	Contig11920_s_at	Contig11920	-	-	4e+0	At4g35025	unknown protein	C.G.	S.X.	Please select
0.33	8e-88	323	Contig25411_at	Contig25411	-	-	2e+0	At2g29540	ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT)	C.G.	S.X.	Please select
0.18	2e-54	212	Contig11173_at	Contig11173	-	-	1e+0	At5g60800	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.18	2e-54	212	Contig11173_s_at	Contig11173	-	-	1e+0	At5g60800	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.23	5e-49	194	Contig20567_at	Contig20567	-	-	4e-1	At1g03850	glutaredoxin family protein	C.G.	S.X.	Please select
0.22	7e-42	171	Contig12877_at	Contig12877	-	-	1e-1	At3g17800	-	C.G.	S.X.	Please select
0.13	4e-31	135	Contig21980_at	Contig21980	-	-	1e-1	At3g24450	copper-binding family protein	C.G.	S.X.	Please select
0.05	2e-2	40	Contig16591_at	Contig16591	-	-	1e+1	At4g05440	EDA35 (embryo sac development arrest 35)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig6129_at	Contig6129	-	-	2e+0	At3g60245	60S ribosomal protein L37a (RPL37aC)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At3g45275	5008067	-	Encodes a ECA1 gametogenesis related family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	Gma.6349.2.S1_at	BE805831	-	-	5e-54	At3g09920	PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE)	C.G.	S.X.	Please select
0.05	3e-4	48	Oryza sativa	Os11g0257800	CB629785	-	Conserved hypothetical protein	6e+0	At5g13250	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e-1	38	Populus trichocarpa	PtpAffx.216274.1.S1_s_at	pmrna30937	hypothetical protein	-	0	Atcg01280	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e-1	36	Triticum aestivum	TaAffx.1849.1.S1_at	CA626573	-	-	1e+0	At2g25190	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1612559_at	CB003638	-	-	5e+0	At5g20670	unknown protein	C.G.	S.X.	Please select
0.04	2e-5	50	Zea mays	Zm.16901.1.A1_at	BM349872	-	-	5e+0	At5g42700	transcriptional factor B3 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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