Gene omics information

Query gene ID Contig118_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4661.0Contig118_atContig118--6e-12At1g08880H2AXAS.X.H.G.
0.5066.9Contig13544_atContig13544--5e-2At1g19300PARVUS (PARVUS)S.X.H.G.
0.4053.1Contig9526_atContig9526--2e-6At4g34040zinc finger (C3HC4-type RING finger) family proteinS.X.H.G.
0.3849.5Contig12348_atContig12348--6e-1At1g04490unknown proteinS.X.H.G.
0.3342.6Contig16555_atContig16555--6e-3At3g12685-S.X.H.G.
0.2935.5HV_CEa0006M01r2_atHV_CEa0006M01r2--3e-1At2g27750nucleolar matrix protein-relatedS.X.H.G.
0.2528.9Contig25900_atContig25900--3e-1At5g65240kinaseS.X.H.G.
0.119.4Contig1184_atContig1184--2e-11At1g07790HTB1S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
21.399.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
17.599.6GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
16.299.6GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
14.699.5GSM146371Golden Promise shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.799.5GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.799.5GSM282021Malting_day4_Legacy_rep 2GSE11200Expression data from malting barley seeds
13.799.5GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seeds
11.299.2GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
10.599.2GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grains
10.299.1GSM146380Maythorpe shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.9101037Contig414_atContig414--2e-12At1g08880H2AXAC.G.S.X.
0.9101037Contig414_x_atContig414--2e-12At1g08880H2AXAC.G.S.X.
0.8201029Contig28_s_atContig28--2e-12At1g08880H2AXAC.G.S.X.
0.585e-162569Contig188_atContig188--9e-8At1g08880H2AXAC.G.S.X.
0.581e-147521Contig76_atContig76--3e-1At4g27230HTA2 (histone H2A)C.G.S.X.
0.561e-147521Contig412_x_atContig412--1e-3At4g27230HTA2 (histone H2A)C.G.S.X.
0.584e-141500Contig54_s_atContig54--1e-3At4g27230HTA2 (histone H2A)C.G.S.X.
0.472e-118424Contig167_x_atContig167--2e-8At1g08880H2AXAC.G.S.X.
0.564e-116416Contig17259_atContig17259--5e-6At4g27230HTA2 (histone H2A)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.106e-1271Arabidopsis thalianaAt1g08880837409H2AXAEncodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.---C.G.S.X.
0.315e-1375Glycine maxPsAffx.psZS009xF02f_atPsAffx.psZS009xF02f--3e-4At5g59870HTA6C.G.S.X.
0.504e-101369Oryza sativaOs03g0279200CA753594-Histone H2A1e-7At5g02560HTA12C.G.S.X.
0.063e-240Populus trichocarpaPtp.6807.1.S1_atDN499732histone 2-6e-27At1g08880H2AXAC.G.S.X.
0.654e-124444Triticum aestivumTa.28802.3.S1_atBJ228498--1e-3At4g27230HTA2 (histone H2A)C.G.S.X.
0.165e-1373Vitis vinifera1608056_atCF511408hypothetical protein LOC100254490-4e-31At1g08880H2AXAC.G.S.X.
0.581e-103375Zea maysZm.16259.1.A1_x_atBQ539455hypothetical protein LOC100273269-1e-6At4g27230HTA2 (histone H2A)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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