Gene omics information

Query gene ID	Contig118_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	61.0	Contig118_at	Contig118	-	-	6e-12	At1g08880	H2AXA	S.X.	H.G.	Please select
0.50	66.9	Contig13544_at	Contig13544	-	-	5e-2	At1g19300	PARVUS (PARVUS)	S.X.	H.G.	Please select
0.40	53.1	Contig9526_at	Contig9526	-	-	2e-6	At4g34040	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.38	49.5	Contig12348_at	Contig12348	-	-	6e-1	At1g04490	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig16555_at	Contig16555	-	-	6e-3	At3g12685	-	S.X.	H.G.	Please select
0.29	35.5	HV_CEa0006M01r2_at	HV_CEa0006M01r2	-	-	3e-1	At2g27750	nucleolar matrix protein-related	S.X.	H.G.	Please select
0.25	28.9	Contig25900_at	Contig25900	-	-	3e-1	At5g65240	kinase	S.X.	H.G.	Please select
0.11	9.4	Contig1184_at	Contig1184	-	-	2e-11	At1g07790	HTB1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.3	99.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
17.5	99.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
16.2	99.6	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.6	99.5	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.7	99.5	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.7	99.5	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
13.7	99.5	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
11.2	99.2	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.5	99.2	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.2	99.1	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.91	0	1037	Contig414_at	Contig414	-	-	2e-12	At1g08880	H2AXA	C.G.	S.X.	Please select
0.91	0	1037	Contig414_x_at	Contig414	-	-	2e-12	At1g08880	H2AXA	C.G.	S.X.	Please select
0.82	0	1029	Contig28_s_at	Contig28	-	-	2e-12	At1g08880	H2AXA	C.G.	S.X.	Please select
0.58	5e-162	569	Contig188_at	Contig188	-	-	9e-8	At1g08880	H2AXA	C.G.	S.X.	Please select
0.58	1e-147	521	Contig76_at	Contig76	-	-	3e-1	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.56	1e-147	521	Contig412_x_at	Contig412	-	-	1e-3	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.58	4e-141	500	Contig54_s_at	Contig54	-	-	1e-3	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.47	2e-118	424	Contig167_x_at	Contig167	-	-	2e-8	At1g08880	H2AXA	C.G.	S.X.	Please select
0.56	4e-116	416	Contig17259_at	Contig17259	-	-	5e-6	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	6e-12	71	Arabidopsis thaliana	At1g08880	837409	H2AXA	Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10–20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	5e-13	75	Glycine max	PsAffx.psZS009xF02f_at	PsAffx.psZS009xF02f	-	-	3e-4	At5g59870	HTA6	C.G.	S.X.	Please select
0.50	4e-101	369	Oryza sativa	Os03g0279200	CA753594	-	Histone H2A	1e-7	At5g02560	HTA12	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	3e-2	40	Populus trichocarpa	Ptp.6807.1.S1_at	DN499732	histone 2	-	6e-27	At1g08880	H2AXA	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.65	4e-124	444	Triticum aestivum	Ta.28802.3.S1_at	BJ228498	-	-	1e-3	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.16	5e-13	73	Vitis vinifera	1608056_at	CF511408	hypothetical protein LOC100254490	-	4e-31	At1g08880	H2AXA	C.G.	S.X.	Please select
0.58	1e-103	375	Zea mays	Zm.16259.1.A1_x_at	BQ539455	hypothetical protein LOC100273269	-	1e-6	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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