CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig1188_s_at

Gene name amylase/protease inhibitor

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 80.3 Contig1188_s_at Contig1188 amylase/protease inhibitor - 6e+0 At5g05120 zinc finger (C2H2 type) family protein S.X. H.G.
0.50 66.9 Contig9642_at Contig9642 - - 1e-13 At4g27960 UBC9 (UBIQUITIN CONJUGATING ENZYME 9) S.X. H.G.
0.46 61.0 Contig25477_at Contig25477 - - 6e+0 At5g33421 unknown protein S.X. H.G.
0.46 61.0 HA31E10r_s_at HA31E10r - - 1e+0 At4g15620 integral membrane family protein S.X. H.G.
0.36 47.1 Contig18051_at Contig18051 - - 4e-1 At1g75250 ATRL6 (ARABIDOPSIS RAD-LIKE 6) S.X. H.G.
0.33 42.6 Contig5316_at Contig5316 - - 5e-1 At1g11572 - S.X. H.G.
0.29 35.5 Contig19576_x_at Contig19576 - - 5e-1 At2g29910 F-box family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.6 99.8 GSM238420 Endosperm 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
24.5 99.8 GSM238422 Endosperm 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
24.4 99.8 GSM238427 Endosperm 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
23.4 99.8 GSM238421 Endosperm 0 h; Seed germination Rep 2 GSE9365 Expression data from barley maturing and germinating grains
19.8 99.7 GSM238423 Endosperm 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
19.0 99.7 GSM282034 Malting_steeped_Morex_rep1 GSE11200 Expression data from malting barley seeds
15.4 99.6 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
14.6 99.5 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
14.5 99.5 GSM238425 Endosperm 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
14.4 99.5 GSM238426 Endosperm 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.88 0 1144 HT11N04r_at HT11N04r - - 5e+0 At5g05120 zinc finger (C2H2 type) family protein C.G. S.X.
0.44 0 765 Contig1186_at Contig1186 - - 8e+0 At5g05120 zinc finger (C2H2 type) family protein C.G. S.X.
0.44 0 765 Contig1186_s_at Contig1186 - - 8e+0 At5g05120 zinc finger (C2H2 type) family protein C.G. S.X.
0.59 2e-152 537 HT07L09u_x_at HT07L09u - - 1e+1 At4g11040 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.56 7e-146 515 HT09B02u_x_at HT09B02u - - 1e+1 At5g48790 unknown protein C.G. S.X.
0.30 1e-51 202 HT09N01u_at HT09N01u - - 2e+1 At5g58787 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.67 5e-51 200 HT10I22u_at HT10I22u - - 3e+0 At5g26720 unknown protein C.G. S.X.
0.06 2e-4 46 Contig871_s_at Contig871 - - 1e+0 At4g37530 peroxidase, putative C.G. S.X.
0.05 1e-2 40 Contig1689_at Contig1689 lipid transfer protein - 6e+0 At4g32150 ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e+0 32 Arabidopsis thaliana At5g05120 830394 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;P - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.10914.1.S1_at CA802681 - - 3e+0 At1g64405 unknown protein C.G. S.X.
0.15 1e-11 71 Oryza sativa Os11g0115400 AF017361.1 - Nonspecific lipid-transfer protein precursor (LTP)(Phospholipid transfer protein) (PLTP) (Allergen Zea m14) 1e-3 At1g74630 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.57723.1.S1_s_at AJ774023 caffeic acid 3-O-methyltransferase - 2e-39 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.90 0 1237 Triticum aestivum Ta.75.1.S1_at X05168.1 - - 5e+0 At5g05120 zinc finger (C2H2 type) family protein C.G. S.X.
0.03 7e+0 30 Vitis vinifera 1617896_at CF513929 - - 1e+0 At2g34850 MEE25 (maternal effect embryo arrest 25) C.G. S.X.
0.10 1e-11 69 Zea mays Zm.19.1.S1_at M57249.1 phospholipid transfer protein homolog1 - 5e+0 At4g32105 galactosyltransferase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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