Gene omics information

Query gene ID	Contig11880_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig11880_at	Contig11880	-	-	2e+0	At2g03110	RNA binding / nucleic acid binding	S.X.	H.G.	Please select
0.80	92.5	Contig8797_at	Contig8797	-	-	1e-2	At4g09080	TOC75-IV	S.X.	H.G.	Please select
0.67	84.7	Contig622_at	Contig622	-	-	2e+0	At5g56840	DNA-binding family protein	S.X.	H.G.	Please select
0.63	80.3	Contig9319_at	Contig9319	-	-	3e-3	At3g66654	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	S.X.	H.G.	Please select
0.59	75.8	Contig15782_at	Contig15782	-	-	1e+0	At2g42760	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig15872_at	Contig15872	-	-	1e+0	At4g24410	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.0	99.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.2	99.0	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.2	98.0	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-1	36	Contig14769_at	Contig14769	-	-	8e-1	At3g21830	ASK8 (ARABIDOPSIS SKP1-LIKE 8)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig14918_at	Contig14918	-	-	7e-3	At5g64960	CDKC2 (Cyclin dependent kinase group C 2)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig14498_at	Contig14498	-	-	9e-3	At2g43590	chitinase, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Contig9625_at	Contig9625	-	-	1e-14	At2g45440	DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig299_at	Contig299	-	-	3e+0	At4g28556	RIC7	C.G.	S.X.	Please select
0.01	3e+0	32	Contig14573_at	Contig14573	-	-	1e-2	At1g04300	-	C.G.	S.X.	Please select
0.02	3e+0	32	Contig13037_at	Contig13037	-	-	2e-4	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig11535_at	Contig11535	-	-	3e-1	At3g04610	FLK (flowering locus KH domain)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig10924_at	Contig10924	-	-	5e-1	At4g28030	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At2g03110	814840	RNA binding / nucleic acid binding	F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	GmaAffx.26985.1.S1_at	BG042251	-	-	1e-2	At5g53590	auxin-responsive family protein	C.G.	S.X.	Please select
0.31	3e-105	383	Oryza sativa	Os01g0120800	AK106560.1	-	Eukaryotic translation initiation factor 3 subunit10 (eIF-3 theta) (Eukaryotic translation initiationfactor 3 large subunit) (eIF3a) (p114)	9e-18	At4g11420	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-2	40	Populus trichocarpa	PtpAffx.212392.1.S1_at	pmrna24281	hypothetical protein	-	3e-4	At5g49950	embryogenesis-associated protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	0	1285	Triticum aestivum	Ta.13478.1.S1_at	BJ323032	-	-	2e-18	At4g11420	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1622527_at	CF202731.1	-	-	1e+1	At4g36960	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.30	4e-52	204	Zea mays	Zm.6558.1.S1_at	AF073329.1	eukaryotic initiation factor3	-	1e-10	At4g11420	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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