Gene omics information

Query gene ID Contig11853_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6178.7Contig11853_atContig11853--2e+0At1g20696HMGB3 (HIGH MOBILITY GROUP B 3)S.X.H.G.
0.6784.7Contig11791_atContig11791--4e+0At5g47090unknown proteinS.X.H.G.
0.6784.7Contig6520_atContig6520--2e+0At3g06090unknown proteinS.X.H.G.
0.6077.3HP01B09w_atHP01B09w--3e+1Atmg00920-S.X.H.G.
0.2732.1Contig21789_atContig21789--3e-1At4g39260GR-RBP8S.X.H.G.
0.2224.2HV04B19u_atHV04B19u--9e-1At5g55507hydroxyproline-rich glycoprotein family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
78.7100.0GSM382236Root_Control2GSE15295Mercury toxicity in barley roots
71.8100.0GSM382235Root_Control1GSE15295Mercury toxicity in barley roots
63.0100.0GSM382237Root_Control3GSE15295Mercury toxicity in barley roots
28.499.8GSM146365Maythorpe Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
20.099.7GSM382232Root_Hg1GSE15295Mercury toxicity in barley roots
19.799.7GSM146363Maythorpe Root Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
17.899.7GSM146358Golden Promise Root Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.499.5GSM146364Maythorpe Root Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
12.899.4GSM146357Golden Promise Root Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.199.1GSM146366Maythorpe Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.149e-1993Contig5808_atContig5808--2e+0At1g62510protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.242e-1685Contig3775_s_atContig3775--5e+0At4g1672060S ribosomal protein L15 (RPL15A)C.G.S.X.
0.264e-1581Contig3782_x_atContig3782--1e+0At4g33660unknown proteinC.G.S.X.
0.194e-1271Contig3779_x_atContig3779--3e-1At4g39250ATRL1 (ARABIDOPSIS RAD-LIKE 1)C.G.S.X.
0.226e-1167Contig4435_atContig4435--2e-3At1g62510protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.182e-1065Contig3780_x_atContig3780--4e-1At4g39250ATRL1 (ARABIDOPSIS RAD-LIKE 1)C.G.S.X.
0.219e-1063Contig3774_s_atContig3774--5e+0At5g14530transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.219e-1063Contig3778_x_atContig3778--3e-1At4g39250ATRL1 (ARABIDOPSIS RAD-LIKE 1)C.G.S.X.
0.113e-961Contig3783_atContig3783--4e-1At2g30766unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Arabidopsis thalianaAt1g20696838659HMGB3 (HIGH MOBILITY GROUP B 3)Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.---C.G.S.X.
0.042e-448Glycine maxGmaAffx.80464.1.S1_atCA850542--4e-5At4g12490protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.401e-54214Oryza sativaOs04g0554500AY466109.1-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein2e+0At2g25820transcription factorC.G.S.X.
0.042e+034Populus trichocarpaPtpAffx.212662.1.S1_atpmrna24773hypothetical protein-3e+0At3g02150PTF1 (PLASTID TRANSCRIPTION FACTOR 1)C.G.S.X.
0.625e-84311Triticum aestivumTa.1840.1.S1_atCK152019protease inhibitor-like protein-8e+0Atmg01300-C.G.S.X.
0.037e+030Vitis vinifera1618143_atCF519032--3e-1At4g29070-C.G.S.X.
0.423e-58224Zea maysZm.1835.2.A1_atCK985959cortical cell-delineating protein-2e+0At3g26660LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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