Gene omics information

Query gene ID	Contig11789_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig11789_at	Contig11789	-	-	2e+0	At3g04620	nucleic acid binding	S.X.	H.G.	Please select
0.71	87.1	Contig2110_at	Contig2110	-	-	1e-2	At2g39900	LIM domain-containing protein	S.X.	H.G.	Please select
0.57	74.9	Contig9797_at	Contig9797	-	-	1e-2	At1g23010	LPR1 (Low Phosphate Root1)	S.X.	H.G.	Please select
0.56	74.3	Contig11383_at	Contig11383	-	-	2e+0	At4g36560	unknown protein	S.X.	H.G.	Please select
0.47	62.2	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.46	61.0	Contig4158_at	Contig4158	-	-	8e-63	At1g60780	HAP13 (HAPLESS 13)	S.X.	H.G.	Please select
0.33	42.6	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.29	35.5	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.0	99.9	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
31.7	99.9	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
30.9	99.9	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
21.1	99.7	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
15.1	99.5	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.1	99.5	GSM372948	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.0	99.1	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.5	99.0	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.4	99.0	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.1	98.7	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	4e-123	440	Contig10193_at	Contig10193	-	-	6e+0	At5g59830	unknown protein	C.G.	S.X.	Please select
0.02	6e-2	38	Contig17751_at	Contig17751	-	-	1e-1	At3g49180	RID3 (ROOT INITIATION DEFECTIVE 3)	C.G.	S.X.	Please select
0.03	6e-2	38	Contig22433_at	Contig22433	-	-	5e+0	At5g50570	squamosa promoter-binding protein, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Contig10415_at	Contig10415	-	-	2e+0	At5g44570	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig9991_at	Contig9991	-	-	9e-6	At1g04250	AXR3 (AUXIN RESISTANT 3)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig12668_s_at	Contig12668	-	-	2e+0	At4g29930	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig12668_at	Contig12668	-	-	2e+0	At4g29930	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig7624_s_at	Contig7624	-	-	9e-16	At2g27680	aldo/keto reductase family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig7624_at	Contig7624	-	-	9e-16	At2g27680	aldo/keto reductase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g04620	819620	nucleic acid binding	F:nucleic acid binding;P:biological_process unknown;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	6e-1	36	Glycine max	GmaAffx.60157.1.S1_at	CA783613	-	-	8e-17	At2g25570	binding	C.G.	S.X.	Please select
0.26	2e-29	131	Oryza sativa	Os01g0841700	U95135.1	-	RPP17-1	7e-3	At5g27560	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+1	32	Populus trichocarpa	PtpAffx.9854.1.S1_at	DN496413	-	-	3e+0	At5g52700	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	0	658	Triticum aestivum	TaAffx.16930.1.S1_at	BJ283852	-	-	2e+0	At5g57950	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please select
0.04	5e-1	34	Vitis vinifera	1610013_s_at	CF213272	hypothetical protein LOC100259835	-	6e-6	At2g26530	AR781	C.G.	S.X.	Please select
0.37	6e-54	210	Zea mays	Zm.2005.1.A1_at	BM379246	elicitor-responsive protein 1	-	1e-1	At5g44568	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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