Gene omics information

Query gene ID	Contig11751_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.65	81.4	Contig11751_at	Contig11751	-	-	1e-4	At4g38580	ATFP6 (FARNESYLATED PROTEIN 6)	S.X.	H.G.	Please select
0.48	63.2	Contig10402_at	Contig10402	-	-	2e-1	At3g54780	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.44	58.9	HV11C23u_s_at	HV11C23u	-	-	1e+0	At5g45920	carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds	S.X.	H.G.	Please select
0.38	49.5	Contig12899_at	Contig12899	-	-	5e-1	At2g18270	unknown protein	S.X.	H.G.	Please select
0.33	42.6	HVSMEi0003H24r2_s_at	HVSMEi0003H24r2	-	-	1e+1	At3g55490	-	S.X.	H.G.	Please select
0.33	42.6	Contig11276_at	Contig11276	-	-	4e-5	At5g58730	pfkB-type carbohydrate kinase family protein	S.X.	H.G.	Please select
0.31	38.6	Contig8485_at	Contig8485	-	-	2e-7	At5g21170	5'-AMP-activated protein kinase beta-2 subunit, putative	S.X.	H.G.	Please select
0.29	35.5	Contig2935_s_at	Contig2935	-	-	3e-14	At4g27130	eukaryotic translation initiation factor SUI1, putative	S.X.	H.G.	Please select
0.25	28.9	Contig5341_at	Contig5341	-	-	8e-4	At5g45930	CHLI2 (MAGNESIUM CHELATASE I2)	S.X.	H.G.	Please select
0.24	27.2	Contig13047_at	Contig13047	-	-	6e-1	At3g01311	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
40.6	99.9	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
38.1	99.9	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
33.4	99.9	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
20.9	99.7	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
19.7	99.7	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
15.0	99.5	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
13.6	99.5	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
13.0	99.4	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.7	99.0	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.6	99.0	GSM398271	HS41-1_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	5e-70	264	EBem09_SQ005_H10_s_at	EBem09_SQ005_H10	-	-	5e+0	At5g54930	AT hook motif-containing protein	C.G.	S.X.	Please select
0.07	1e-5	50	Contig8955_at	Contig8955	-	-	1e-1	At5g66110	metal ion binding	C.G.	S.X.	Please select
0.12	8e-4	44	Contig6074_at	Contig6074	-	-	5e-4	At1g71050	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.04	1e-2	40	Contig6073_at	Contig6073	-	-	6e-1	At5g17450	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.03	5e-2	38	HVSMEn0017O18r2_at	HVSMEn0017O18r2	-	-	1e-2	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.02	5e-2	38	Contig3058_at	Contig3058	-	-	2e-4	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.05	5e-2	38	Contig16185_at	Contig16185	-	-	5e-1	At5g66110	metal ion binding	C.G.	S.X.	Please select
0.01	2e-1	36	Contig6805_at	Contig6805	-	-	1e-9	At1g43800	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Contig5383_s_at	Contig5383	-	-	1e-3	At5g53050	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	1e-4	48	Arabidopsis thaliana	At4g38580	830015	ATFP6 (FARNESYLATED PROTEIN 6)	putative farnesylated protein (At4g38580) mRNA, complete	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	1e-8	61	Glycine max	Gma.1397.1.S1_a_at	CD408242	-	-	6e-24	At4g38580	ATFP6 (FARNESYLATED PROTEIN 6)	C.G.	S.X.	Please select
0.25	1e-30	135	Oryza sativa	Os04g0244800	AK121488.1	-	Heavy metal transport/detoxification proteindomain containing protein	5e-10	At4g38580	ATFP6 (FARNESYLATED PROTEIN 6)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Populus trichocarpa	PtpAffx.215327.1.S1_at	pmrna29447	hypothetical protein	-	6e-1	At3g18280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.35	3e-51	202	Triticum aestivum	Ta.4941.1.S1_at	BT009077.1	-	-	5e-4	At5g66110	metal ion binding	C.G.	S.X.	Please select
0.09	2e-9	61	Vitis vinifera	1608337_at	BQ792532	hypothetical protein LOC100260571	-	2e-15	At5g66110	metal ion binding	C.G.	S.X.	Please select
0.28	2e-29	129	Zea mays	Zm.10202.1.A1_at	AY112463.1	farnesylated protein 1	-	3e-8	At5g66110	metal ion binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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