CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig11711_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 78.7 Contig11711_at Contig11711 - - 1e-4 At4g13510 AMT1 S.X. H.G.
0.35 45.1 HS09L05u_at HS09L05u - - 4e+0 At5g45350 proline-rich family protein S.X. H.G.
0.29 35.5 Contig18811_at Contig18811 - - 6e-1 At3g06435 Expressed protein S.X. H.G.
0.12 10.4 Contig4590_at Contig4590 - - 6e+0 At2g18740 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative S.X. H.G.
0.07 5.8 Contig4608_at Contig4608 - - 3e-9 At1g12840 DET3 (DE-ETIOLATED 3) S.X. H.G.
0.07 5.8 Contig3898_at Contig3898 - - 1e-7 At3g13200 EMB2769 (EMBRYO DEFECTIVE 2769) S.X. H.G.
0.06 4.8 HV11C23u_s_at HV11C23u - - 1e+0 At5g45920 carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds S.X. H.G.
0.03 2.6 Contig20086_s_at Contig20086 - - 1e+0 At5g57570 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.0 97.9 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
5.3 97.4 GSM372963 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.0 97.2 GSM372994 genotype: 11542 - pathogen isolates: K1 - time: 0 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.9 97.1 GSM372964 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7 96.9 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
4.6 96.8 GSM398273 Moroc9-75_0d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.5 96.7 GSM146367 Maythorpe Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.5 96.7 GSM398279 Moroc9-75_3d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.5 96.7 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
4.5 96.7 GSM146361 Golden Promise Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 2e-79 295 Contig20708_at Contig20708 - - 1e-4 At4g13510 AMT1 C.G. S.X.
0.03 2e-2 40 Contig22260_at Contig22260 - - 8e-2 At5g20130 unknown protein C.G. S.X.
0.02 7e-2 38 Contig20259_at Contig20259 - - 5e-1 At4g39100 SHL1 (short life) C.G. S.X.
0.03 3e-1 36 HM03E04u_at HM03E04u - - 1e+1 At5g35640 - C.G. S.X.
0.02 3e-1 36 Contig491_s_at Contig491 - - 2e-11 At4g33010 AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1) C.G. S.X.
0.02 3e-1 36 Contig16498_at Contig16498 - - 4e+0 At2g35730 heavy-metal-associated domain-containing protein C.G. S.X.
0.02 3e-1 36 Contig16010_at Contig16010 - - 2e+1 Atmg01040 - C.G. S.X.
0.02 3e-1 36 Contig14426_at Contig14426 - - 9e-2 At1g80820 CCR2 (CINNAMOYL COA REDUCTASE) C.G. S.X.
0.01 3e-1 36 Contig9989_at Contig9989 - - 2e-1 At4g23710 VAG2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-4 48 Arabidopsis thaliana At4g13510 826983 AMT1 Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake. - - - C.G. S.X.
0.03 2e-1 38 Glycine max Gma.9265.1.S1_at BU551320 - - 6e-6 At4g28700 AMT1 C.G. S.X.
0.38 0 680 Oryza sativa Os04g0509600 AF001505.1 - - 1e-12 At1g64780 ATAMT1 C.G. S.X.
0.09 3e+0 34 Populus trichocarpa PtpAffx.215156.1.S1_at pmrna29194 ammonium transporter - 6e-2 At1g64780 ATAMT1 C.G. S.X.
0.56 0 1059 Triticum aestivum Ta.27312.1.S1_x_at BT009318.1 Ammonium transporter - 8e-17 At4g13510 AMT1 C.G. S.X.
0.06 5e-11 67 Vitis vinifera 1610744_at CF415597 hypothetical protein LOC100258016 - 1e+0 At2g47170 ARF1A1C C.G. S.X.
0.39 3e-130 464 Zea mays Zm.11141.1.S1_at AY106810.1 hypothetical protein LOC100272903 - 1e-7 At1g64780 ATAMT1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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