Gene omics information

Query gene ID	Contig1167_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	89.1	Contig1167_s_at	Contig1167	-	-	5e-9	At3g09480	histone H2B, putative	S.X.	H.G.	Please select
0.44	58.9	Contig26263_at	Contig26263	-	-	4e+0	At5g54350	-	S.X.	H.G.	Please select
0.36	47.1	HVSMEi0006K11r2_s_at	HVSMEi0006K11r2	-	-	6e-2	At2g19900	ATNADP-ME1 (NADP-malic enzyme 1)	S.X.	H.G.	Please select
0.34	43.6	Contig7622_at	Contig7622	-	-	2e-7	At3g18380	sequence-specific DNA binding / transcription factor	S.X.	H.G.	Please select
0.31	38.6	Contig5368_at	Contig5368	-	-	2e+0	At3g46150	unknown protein	S.X.	H.G.	Please select
0.31	38.6	Contig25838_at	Contig25838	-	-	2e-17	At3g24180	catalytic/ glucosylceramidase	S.X.	H.G.	Please select
0.29	35.5	Contig6616_at	Contig6616	-	-	1e-57	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	S.X.	H.G.	Please select
0.29	35.5	Contig2830_at	Contig2830	-	-	2e-4	At5g22920	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.28	35.5	Contig13468_at	Contig13468	-	-	2e+0	At2g33850	unknown protein	S.X.	H.G.	Please select
0.28	35.5	Contig3727_at	Contig3727	-	-	5e-66	At3g62560	GTP-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.2	99.0	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.7	98.9	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.3	98.8	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.3	98.8	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.2	98.7	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.2	98.7	GSM68890	3 h control replicate 2	GSE3097	Barley1 salinity stress study
7.7	98.6	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.2	98.5	GSM68902	27 h control replicate 2	GSE3097	Barley1 salinity stress study
7.2	98.5	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	0	728	Contig1127_at	Contig1127	-	-	8e-24	At1g07790	HTB1	C.G.	S.X.	Please select
0.63	0	694	Contig1122_s_at	Contig1122	-	-	1e-22	At1g07790	HTB1	C.G.	S.X.	Please select
0.85	0	690	Contig1125_x_at	Contig1125	-	-	1e-22	At1g07790	HTB1	C.G.	S.X.	Please select
0.77	0	686	Contig1128_x_at	Contig1128	-	-	9e-8	At3g09480	histone H2B, putative	C.G.	S.X.	Please select
0.62	0	676	Contig1164_at	Contig1164	-	-	3e-10	At3g53650	histone H2B, putative	C.G.	S.X.	Please select
0.62	0	652	Contig1129_at	Contig1129	-	-	8e-8	At3g09480	histone H2B, putative	C.G.	S.X.	Please select
0.79	9e-179	624	Contig1177_at	Contig1177	-	-	2e-20	At1g07790	HTB1	C.G.	S.X.	Please select
0.66	5e-168	589	Contig1142_at	Contig1142	-	-	5e-9	At3g09480	histone H2B, putative	C.G.	S.X.	Please select
0.64	1e-156	551	rbags21h11_at	rbags21h11	-	-	1e-22	At1g07790	HTB1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	5e-9	61	Arabidopsis thaliana	At3g09480	820105	histone H2B, putative	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.43	1e-47	190	Glycine max	Gma.5572.1.S1_s_at	CD414878	-	-	1e-50	At5g59910	HTB4	C.G.	S.X.	Please select
0.48	5e-91	335	Oryza sativa	Os01g0839500	BE039851	-	Histone H2B (CaH2B)	3e-29	At1g07790	HTB1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	5e-13	75	Populus trichocarpa	Ptp.6635.1.S1_at	BU886587	-	-	3e-51	At3g45980	HTB9	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.63	0	670	Triticum aestivum	Ta.7378.29.S1_at	BJ231541	-	-	4e-13	At1g07790	HTB1	C.G.	S.X.	Please select
0.47	2e-24	111	Vitis vinifera	1615448_at	CF568935	-	-	1e-61	At5g59910	HTB4	C.G.	S.X.	Please select
0.52	5e-137	486	Zea mays	Zm.14497.4.A1_at	CF631109	-	-	4e-13	At1g07790	HTB1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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