CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig11674_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 88.7 Contig11674_at Contig11674 - - 3e-1 At5g49420 MADS-box protein (AGL84) S.X. H.G.
0.59 75.8 Contig20382_at Contig20382 - - 4e-1 At1g53910 RAP2.12 S.X. H.G.
0.55 72.0 Contig19027_at Contig19027 - - 1e+0 At5g05290 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) S.X. H.G.
0.50 66.9 Contig16251_at Contig16251 - - 2e-2 At1g74140 - S.X. H.G.
0.50 66.9 Contig18946_at Contig18946 - - 1e+0 At5g65220 ribosomal protein L29 family protein S.X. H.G.
0.42 55.2 Contig16664_at Contig16664 - - 3e-8 At1g73180 eukaryotic translation initiation factor-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.6 99.7 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.9 99.3 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.7 99.2 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
10.5 99.2 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.5 98.8 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.1 98.7 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.8 98.6 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.8 98.3 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.9 97.9 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.4 97.5 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 9e-3 42 Contig4608_at Contig4608 - - 3e-9 At1g12840 DET3 (DE-ETIOLATED 3) C.G. S.X.
0.02 1e-1 38 bah28h09_at bah28h09 - - 3e-19 At4g11600 ATGPX6 (GLUTATHIONE PEROXIDASE 6) C.G. S.X.
0.01 1e-1 38 Contig2262_at Contig2262 - - 1e-119 At3g56940 CRD1 (COPPER RESPONSE DEFECT 1) C.G. S.X.
0.01 5e-1 36 Contig14726_at Contig14726 - - 2e+0 At3g10020 unknown protein C.G. S.X.
0.01 5e-1 36 Contig11668_at Contig11668 - - 1e-2 At5g63480 unknown protein C.G. S.X.
0.01 5e-1 36 Contig2826_at Contig2826 - - 1e-21 At3g44110 ATJ3 C.G. S.X.
0.01 5e-1 36 Contig8716_at Contig8716 - - 3e-5 At1g37130 NIA2 (NITRATE REDUCTASE 2) C.G. S.X.
0.01 5e-1 36 Contig18420_s_at Contig18420 - - 2e-1 At2g23320 WRKY15 C.G. S.X.
0.01 5e-1 36 Contig10293_at Contig10293 - - 6e-17 At4g27880 seven in absentia (SINA) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-1 38 Arabidopsis thaliana At5g49420 835002 MADS-box protein (AGL84) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO - - - C.G. S.X.
0.02 4e-1 38 Glycine max HgAffx.12712.1.A1_at CK351636 - - 1e+0 At5g47550 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.61 0 686 Oryza sativa Os02g0596100 AK073510.1 - Conserved hypothetical protein 8e-2 At2g30560 glycine-rich protein C.G. S.X.
0.02 6e+0 34 Populus trichocarpa PtpAffx.42028.1.A1_at DN488447 - - 3e-1 At4g00130 - C.G. S.X.
0.26 3e-106 387 Triticum aestivum TaAffx.104090.1.A1_at CD868610 - - 5e+0 At3g47510 unknown protein C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1618586_a_at BQ794997 - - 3e-11 At4g22300 SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1) C.G. S.X.
0.19 2e-21 103 Zea mays Zm.921.1.A1_at BF729210 - - 9e+0 At5g10060 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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