Gene omics information

Query gene ID	Contig11649_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig11649_at	Contig11649	-	-	1e-1	At1g21840	UREF (urease accessory protein F)	S.X.	H.G.	Please select
0.83	94.0	Contig12714_at	Contig12714	-	-	2e-7	At3g55030	PGPS2 (phosphatidylglycerolphosphate synthase 2)	S.X.	H.G.	Please select
0.73	88.7	Contig2843_at	Contig2843	-	-	4e-20	At3g06700	60S ribosomal protein L29 (RPL29A)	S.X.	H.G.	Please select
0.73	88.7	Contig5282_at	Contig5282	-	-	1e-11	At2g37340	RSZ33	S.X.	H.G.	Please select
0.63	80.3	Contig19331_at	Contig19331	-	-	3e+0	At1g67210	proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein	S.X.	H.G.	Please select
0.61	78.7	Contig6688_s_at	Contig6688	-	-	1e-8	At3g02360	6-phosphogluconate dehydrogenase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.5	99.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.0	99.1	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
9.4	99.0	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
9.4	99.0	GSM68898	8 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
9.3	99.0	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
8.7	98.9	GSM160464	drought control rep1	GSE6990	Barley drought stress
8.6	98.8	GSM68904	27 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
8.6	98.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
8.5	98.8	GSM68899	8 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
8.3	98.8	GSM261026	ABA-Early-rep3	GSE10328	ABA experiment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-2	38	HVSMEf0009A08r2_s_at	HVSMEf0009A08r2	-	-	1e+1	At4g32480	unknown protein	C.G.	S.X.	Please select
0.03	6e-2	38	HVSMEf0009A08r2_at	HVSMEf0009A08r2	-	-	1e+1	At4g32480	unknown protein	C.G.	S.X.	Please select
0.01	6e-2	38	Contig8183_at	Contig8183	-	-	1e-42	At3g59760	OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C)	C.G.	S.X.	Please select
0.02	6e-2	38	Contig15873_at	Contig15873	-	-	3e+0	At3g43490	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select
0.02	6e-2	38	Contig14011_at	Contig14011	-	-	1e-1	At2g05400	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.03	6e-2	38	Contig3513_at	Contig3513	-	-	4e-1	At4g02590	UNE12 (unfertilized embryo sac 12)	C.G.	S.X.	Please select
0.02	6e-2	38	Contig11640_at	Contig11640	-	-	1e-1	At4g11660	AT-HSFB2B	C.G.	S.X.	Please select
0.02	6e-2	38	Contig10475_at	Contig10475	-	-	1e-7	At1g13690	ATE1	C.G.	S.X.	Please select
0.02	6e-2	38	Contig7010_at	Contig7010	-	-	3e-62	At4g29510	PRMT11 (ARGININE METHYLTRANSFERASE 11)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	38	Arabidopsis thaliana	At1g21840	838786	UREF (urease accessory protein F)	Encodes a urease accessory protein which is essential for the activation of plant urease.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	PsAffx.CL2608Contig1_at	PsAffx.CL2608Contig1	-	-	1e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select
0.45	5e-95	349	Oryza sativa	Os04g0517000	AK101663.1	-	Conserved hypothetical protein	3e-2	At1g11700	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-3	44	Populus trichocarpa	PtpAffx.13773.2.A1_at	CV274005	hypothetical protein	-	1e+0	At1g62422	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.63	0	779	Triticum aestivum	TaAffx.5687.1.S1_at	CK211554	-	-	1e-1	At1g21840	UREF (urease accessory protein F)	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1613111_at	CA809998	-	-	1e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	C.G.	S.X.	Please select
0.37	9e-81	299	Zea mays	Zm.14463.1.A1_at	BM336602	hypothetical protein LOC100194081	-	2e+0	At4g22380	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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