Gene omics information

Query gene ID	Contig11557_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig11557_at	Contig11557	-	-	2e+0	At5g27860	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig14848_at	Contig14848	-	-	5e+0	At3g55240	-	S.X.	H.G.	Please select
0.50	66.9	Contig1470_s_at	Contig1470	-	-	6e-3	At4g00610	DNA-binding storekeeper protein-related	S.X.	H.G.	Please select
0.50	66.9	Contig1356_s_at	Contig1356	-	-	4e+0	At4g02450	glycine-rich protein	S.X.	H.G.	Please select
0.44	58.9	Contig14457_at	Contig14457	-	-	6e-3	At2g44525	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig9946_at	Contig9946	-	-	8e+0	At5g12840	NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.2	99.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
33.8	99.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
26.0	99.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.4	98.1	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.5	97.6	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-2	38	Contig14898_at	Contig14898	-	-	5e+0	At5g51451	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig6604_at	Contig6604	-	-	1e-4	At1g18100	E12A11	C.G.	S.X.	Please select
0.03	2e-1	36	Contig6604_s_at	Contig6604	-	-	1e-4	At1g18100	E12A11	C.G.	S.X.	Please select
0.02	2e-1	36	Contig15168_at	Contig15168	-	-	1e-1	At1g11240	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig20736_at	Contig20736	-	-	2e-40	At4g26110	NAP1	C.G.	S.X.	Please select
0.03	8e-1	34	HM09B22r_at	HM09B22r	-	-	2e-1	At1g44760	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig15869_at	Contig15869	-	-	5e-1	At1g32240	KAN2 (KANADI 2)	C.G.	S.X.	Please select
0.01	8e-1	34	Contig9144_at	Contig9144	-	-	1e-15	At3g20860	ATNEK5 (NIMA-RELATED KINASE5)	C.G.	S.X.	Please select
0.01	8e-1	34	Contig5180_at	Contig5180	-	-	4e-66	At1g44900	ATP binding / DNA binding / DNA-dependent ATPase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g27860	832849	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-2	40	Glycine max	PsAffx.C21000103_at	PsAffx.C21000103	-	-	1e-3	At4g39870	-	C.G.	S.X.	Please select
0.43	2e-48	194	Oryza sativa	Os06g0198700	AK060012.1	-	Conserved hypothetical protein	5e-1	At5g11610	exostosin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	9e+0	32	Populus trichocarpa	PtpAffx.68822.1.A1_at	CV283932	hypothetical protein	-	2e+0	At3g23650	protein kinase-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.75	0	771	Triticum aestivum	Ta.24811.1.S1_a_at	CA653994	-	-	2e+0	At1g61800	GPT2	C.G.	S.X.	Please select
0.03	3e-2	38	Vitis vinifera	1617834_at	CF403807	-	-	1e+0	At2g18200	unknown protein	C.G.	S.X.	Please select
0.22	3e-15	81	Zea mays	Zm.14237.1.S1_at	AY109253.1	hypothetical protein LOC100276891	-	2e+0	At4g29970	F-box family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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