CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig11540_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.69 85.5 Contig11540_at Contig11540 - - 3e+0 At3g44190 pyridine nucleotide-disulphide oxidoreductase family protein S.X. H.G.
0.92 98.4 Contig19710_at Contig19710 - - 9e-11 At3g10550 phosphatase/ protein tyrosine phosphatase S.X. H.G.
0.87 95.0 Contig11611_at Contig11611 - - 4e-1 At5g65060 MAF3 (MADS AFFECTING FLOWERING 3) S.X. H.G.
0.84 94.3 Contig11470_at Contig11470 - - 8e-4 At4g02780 GA1 (GA REQUIRING 1) S.X. H.G.
0.84 94.3 EBpi01_SQ005_I12_x_at EBpi01_SQ005_I12 - - 1e+0 At3g05300 cytidine/deoxycytidylate deaminase family protein S.X. H.G.
0.83 94.0 Contig4883_at Contig4883 - - 2e-4 At4g38220 aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative S.X. H.G.
0.82 93.1 Contig25005_at Contig25005 - - 4e+0 At2g28480 RNA binding S.X. H.G.
0.81 92.8 Contig6842_at Contig6842 - - 2e-4 At1g78980 SRF5 (STRUBBELIG-RECEPTOR FAMILY 5) S.X. H.G.
0.81 92.8 Contig13000_at Contig13000 - - 8e-58 At1g10950 endomembrane protein 70, putative S.X. H.G.
0.81 92.8 Contig11291_at Contig11291 - - 1e-4 At5g47320 RPS19 (RIBOSOMAL PROTEIN S19) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.5 99.4 GSM261075 Albina e-16 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.5 99.4 GSM261035 Dicktoo-chilling-rep3 GSE10329 Low temperature stress in cv. Dicktoo
12.2 99.4 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.4 99.2 GSM261040 Dicktoo-deacclimation-rep2 GSE10329 Low temperature stress in cv. Dicktoo
10.4 99.2 GSM261074 Albina e-16 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.9 99.1 GSM261039 Dicktoo-deacclimation-rep1 GSE10329 Low temperature stress in cv. Dicktoo
9.7 99.0 GSM161220 cold treatment rep2 GSE6993 Barley low temperature stress
9.5 99.0 GSM160823 19% SWC rep1 GSE6990 Barley drought stress
9.5 99.0 GSM160819 38% SWC rep1 GSE6990 Barley drought stress
9.3 99.0 GSM261033 Dicktoo-chilling-rep1 GSE10329 Low temperature stress in cv. Dicktoo
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.68 7e-157 551 Contig11540_s_at Contig11540 - - 3e+0 At3g44190 pyridine nucleotide-disulphide oxidoreductase family protein C.G. S.X.
0.39 8e-95 345 Contig11541_at Contig11541 - - 3e-1 At2g05540 glycine-rich protein C.G. S.X.
0.04 1e-1 36 HD04N17u_at HD04N17u - - 3e-1 At1g09575 unknown protein C.G. S.X.
0.02 2e+0 32 Contig14918_at Contig14918 - - 7e-3 At5g64960 CDKC2 (Cyclin dependent kinase group C 2) C.G. S.X.
0.02 2e+0 32 Contig10474_at Contig10474 - - 2e-16 At1g80950 phospholipid/glycerol acyltransferase family protein C.G. S.X.
0.02 6e+0 30 Contig6523_at Contig6523 - - 1e-1 At1g29840 esterase/lipase/thioesterase family protein C.G. S.X.
0.03 6e+0 30 Contig17055_at Contig17055 - - 2e-6 At5g66350 SHI (SHORT INTERNODES) C.G. S.X.
0.02 6e+0 30 Contig16722_at Contig16722 - - 8e-15 At3g24210 ankyrin repeat family protein C.G. S.X.
0.04 6e+0 30 HO01J13S_at HO01J13S - - 2e-1 At1g78070 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 32 Arabidopsis thaliana At3g44190 823541 pyridine nucleotide-disulphide oxidoreductase family protein F:electron carrier activity, oxidoreductase activity, FAD binding;P:unknown;C:unknown;BOFAMP - - - C.G. S.X.
0.06 3e-1 36 Glycine max GmaAffx.92360.1.S1_at CF808085 - - 5e-1 At1g34000 OHP2 (ONE-HELIX PROTEIN 2) C.G. S.X.
0.02 7e+0 32 Oryza sativa Os05g0503900 9633.m03979 - - 2e-1 At3g49820 unknown protein C.G. S.X.
0.03 5e+0 32 Populus trichocarpa PtpAffx.73770.1.S1_at DN496814 - - 2e-1 At4g01420 CBL5 (CALCINEURIN B-LIKE PROTEIN 5) C.G. S.X.
0.56 3e-34 145 Triticum aestivum Ta.23904.1.S1_at CA735690 - - 2e-1 At1g53620 unknown protein C.G. S.X.
0.03 4e+0 30 Vitis vinifera 1618287_at CD802116 hypothetical protein LOC100241989 - 7e-2 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
0.03 6e+0 30 Zea mays ZmAffx.1449.1.S1_at 40794996-6 - - 1e+0 At3g32090 transcription factor-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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