CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig11534_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.82 93.1 Contig11534_at Contig11534 - - 1e-1 At5g21910 unknown protein S.X. H.G.
0.86 94.8 Contig12748_at Contig12748 - - 6e-2 At1g80130 binding S.X. H.G.
0.83 94.0 Contig18940_at Contig18940 - - 6e-13 At5g09350 PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) S.X. H.G.
0.82 93.1 Contig17080_at Contig17080 - - 9e+0 At5g64816 unknown protein S.X. H.G.
0.82 93.1 EBem10_SQ001_P13_s_at EBem10_SQ001_P13 - - 8e+0 At5g66550 Maf family protein S.X. H.G.
0.80 92.5 HS04L14u_at HS04L14u - - 2e+0 At2g21237 unknown protein S.X. H.G.
0.79 91.4 Contig8058_at Contig8058 - - 5e+0 At3g15210 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) S.X. H.G.
0.79 91.4 Contig5270_x_at Contig5270 - - 2e+0 At4g14430 IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10) S.X. H.G.
0.77 90.8 Contig7164_at Contig7164 - - 2e+0 At2g40435 - S.X. H.G.
0.76 89.8 Contig14437_at Contig14437 - - 1e+0 At4g19640 ARA7 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.4 99.9 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
38.5 99.9 GSM282022 Malting_day4_Merit_rep4 GSE11200 Expression data from malting barley seeds
29.6 99.9 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
23.4 99.8 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
18.4 99.7 GSM282023 Malting_day4_Merit_rep3 GSE11200 Expression data from malting barley seeds
16.0 99.6 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
15.9 99.6 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
14.4 99.5 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
13.8 99.5 GSM282020 Malting_day4_Legacy_rep 3 GSE11200 Expression data from malting barley seeds
13.1 99.4 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 8e-14 77 Contig18942_at Contig18942 - - 5e-1 At2g18530 protein kinase family protein C.G. S.X.
0.06 2e-5 50 Contig16814_at Contig16814 - - 6e-5 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.02 4e-3 42 Contig18224_at Contig18224 - - 8e+0 At5g03400 unknown protein C.G. S.X.
0.02 2e-2 40 Contig3576_at Contig3576 - - 1e-8 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) C.G. S.X.
0.02 2e-2 40 Contig697_s_at Contig697 - - 2e-1 At3g11070 outer membrane OMP85 family protein C.G. S.X.
0.02 2e-2 40 Contig3919_at Contig3919 - - 3e-21 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) C.G. S.X.
0.02 7e-2 38 HV_CEb0023K20r2_at HV_CEb0023K20r2 - - 1e+0 At1g76954 - C.G. S.X.
0.02 3e-1 36 Contig13931_at Contig13931 - - 2e+0 At5g47080 CKB1 C.G. S.X.
0.01 3e-1 36 Contig11564_at Contig11564 - - 1e-2 At1g17790 DNA-binding bromodomain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Arabidopsis thaliana At5g21910 832251 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.04 5e-5 50 Glycine max GmaAffx.92499.1.S1_s_at CF809203 Win gene encoding wound-induced protein - 2e-15 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.28 1e-74 282 Oryza sativa Os04g0173800 M24504.1 - Lectin precursor (Agglutinin) 1e-1 At2g43610 glycoside hydrolase family 19 protein C.G. S.X.
0.03 5e-2 40 Populus trichocarpa PtpAffx.217402.1.S1_at pmrna32651 hypothetical protein - 9e+0 At5g48650 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein C.G. S.X.
0.76 0 920 Triticum aestivum TaAffx.69777.1.S1_at J02961.1 - - 1e-4 At2g43570 chitinase, putative C.G. S.X.
0.04 4e-8 57 Vitis vinifera 1617192_at AY137377.1 class IV chitinase - 4e-2 At2g43570 chitinase, putative C.G. S.X.
0.05 6e-5 48 Zea mays Zm.12391.1.S1_at CF349132 endochitinase PR4 - 1e-1 At3g54420 ATEP3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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