Gene omics information

Query gene ID	Contig11477_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig11477_at	Contig11477	-	-	8e-5	At1g79040	PSBR (photosystem II subunit R)	S.X.	H.G.	Please select
0.67	84.7	Contig2343_s_at	Contig2343	-	-	1e+0	At5g26010	catalytic/ protein serine/threonine phosphatase	S.X.	H.G.	Please select
0.50	66.9	Contig7360_at	Contig7360	-	-	3e+0	At4g19620	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig19949_at	Contig19949	-	-	7e+0	At3g02620	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	S.X.	H.G.	Please select
0.40	53.1	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	S.X.	H.G.	Please select
0.36	47.1	Contig624_at	Contig624	-	-	3e-3	At2g31390	pfkB-type carbohydrate kinase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.3	99.9	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
35.5	99.9	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
34.9	99.9	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
30.5	99.9	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
27.3	99.8	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
23.4	99.8	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
18.7	99.7	GSM71155	Morex stress and unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
14.4	99.5	GSM71156	Morex stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
14.3	99.5	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
14.1	99.5	GSM71143	OWB-R stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	6e-180	628	rbaal9h21_s_at	rbaal9h21	-	-	5e-5	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.33	3e-52	204	Contig931_at	Contig931	-	-	5e-3	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.15	3e-52	204	Contig383_at	Contig383	-	-	2e-2	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.31	3e-24	111	Contig996_s_at	Contig996	-	-	5e-3	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.21	1e-8	59	S0001000056D22F1_at	S0001000056D22F1	-	-	3e+0	At4g34170	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig16852_at	Contig16852	-	-	2e-3	At3g47670	enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor	C.G.	S.X.	Please select
0.02	6e-1	34	Contig11446_at	Contig11446	-	-	6e-4	At1g62240	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	34	Contig11349_at	Contig11349	-	-	5e+0	At5g20110	dynein light chain, putative	C.G.	S.X.	Please select
0.01	6e-1	34	Contig2275_s_at	Contig2275	-	-	3e-25	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	8e-5	48	Arabidopsis thaliana	At1g79040	844245	PSBR (photosystem II subunit R)	Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	Gma.7703.1.S1_at	BQ298981	-	-	3e+0	At5g06790	unknown protein	C.G.	S.X.	Please select
0.45	7e-78	291	Oryza sativa	Os.20936.1.S1_a_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	3e-2	40	Populus trichocarpa	Ptp.1134.1.S1_x_at	CV280712	hypothetical protein	-	6e-10	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.40	2e-48	192	Triticum aestivum	Ta.28750.2.A1_x_at	BG905748	-	-	1e+0	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.07	1e-4	46	Vitis vinifera	1618031_s_at	CF404451	hypothetical protein LOC100243967	-	2e-12	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.18266.1.S1_at	AJ507106.1	zinc ribbon 1	-	9e-5	At1g68730	zinc finger (DNL type) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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