Gene omics information

Query gene ID	Contig11464_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	S.X.	H.G.	Please select
0.91	98.1	Contig4175_at	Contig4175	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	S.X.	H.G.	Please select
0.80	92.5	Contig4760_s_at	Contig4760	-	-	1e+0	At4g38700	disease resistance-responsive family protein	S.X.	H.G.	Please select
0.73	88.7	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	S.X.	H.G.	Please select
0.67	84.7	Contig5117_at	Contig5117	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	S.X.	H.G.	Please select
0.61	78.7	Contig6995_at	Contig6995	-	-	2e-8	At5g57270	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.3	99.8	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
22.0	99.8	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
20.0	99.7	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
17.3	99.6	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
16.7	99.6	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
16.3	99.6	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
13.6	99.5	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
13.2	99.4	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.2	99.2	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.3	99.1	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	3e-14	79	Contig4459_at	Contig4459	-	-	4e-7	At3g57520	AtSIP2 (Arabidopsis thaliana seed imbibition 2)	C.G.	S.X.	Please select
0.04	3e-5	50	Contig26196_at	Contig26196	-	-	4e-1	At1g08570	ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)	C.G.	S.X.	Please select
0.02	6e-3	42	Contig6104_at	Contig6104	-	-	1e-3	At3g57520	AtSIP2 (Arabidopsis thaliana seed imbibition 2)	C.G.	S.X.	Please select
0.01	3e-2	40	Contig11623_at	Contig11623	-	-	2e-1	At5g11330	monooxygenase family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig6776_s_at	Contig6776	-	-	2e-3	At1g20850	XCP2 (xylem cysteine peptidase 2)	C.G.	S.X.	Please select
0.02	1e-1	38	Contig11540_s_at	Contig11540	-	-	3e+0	At3g44190	pyridine nucleotide-disulphide oxidoreductase family protein	C.G.	S.X.	Please select
0.02	1e-1	38	Contig11540_at	Contig11540	-	-	3e+0	At3g44190	pyridine nucleotide-disulphide oxidoreductase family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig8658_at	Contig8658	-	-	1e-1	At5g46890	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig14610_at	Contig14610	-	-	5e-2	At2g44060	late embryogenesis abundant family protein / LEA family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	6e-20	99	Arabidopsis thaliana	At1g55740	842023	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-12	75	Glycine max	Gma.12012.1.S1_s_at	BU548282	-	-	1e-14	At3g57520	AtSIP2 (Arabidopsis thaliana seed imbibition 2)	C.G.	S.X.	Please select
0.47	4e-155	549	Oryza sativa	Os08g0495800	AK067229.1	-	Raffinose synthase family protein	3e-26	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	3e-16	87	Populus trichocarpa	PtpAffx.216301.1.S1_s_at	pmrna30987	hypothetical protein	-	3e-35	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	3e-179	628	Triticum aestivum	Ta.26092.1.S1_at	CD452594	-	-	1e+0	At1g49405	integral membrane protein, putative	C.G.	S.X.	Please select
0.08	1e-6	54	Vitis vinifera	1608995_at	BQ796616	hypothetical protein LOC100248608	-	2e-92	At3g57520	AtSIP2 (Arabidopsis thaliana seed imbibition 2)	C.G.	S.X.	Please select
0.27	1e-47	190	Zea mays	Zm.19172.1.A1_at	CO528850	hypothetical protein LOC100274312	-	7e-3	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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