Gene omics information

Query gene ID	Contig11458_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig11458_at	Contig11458	-	-	6e-1	At1g51730	RWD domain-containing protein	S.X.	H.G.	Please select
0.80	92.5	Contig9529_at	Contig9529	-	-	4e-4	At3g19910	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.50	66.9	Contig5401_at	Contig5401	-	-	1e-39	At1g03475	LIN2 (LESION INITIATION 2)	S.X.	H.G.	Please select
0.44	58.9	Contig4569_at	Contig4569	-	-	5e-6	At5g04590	SIR	S.X.	H.G.	Please select
0.28	35.5	rbasd15a18_s_at	rbasd15a18	-	-	8e-2	At5g64230	unknown protein	S.X.	H.G.	Please select
0.26	30.4	Contig21290_at	Contig21290	-	-	2e+0	At5g01910	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.8	98.6	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
6.1	98.0	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
5.8	97.8	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6	97.7	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
5.4	97.5	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.1	97.3	GSM372994	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.9	97.1	GSM261035	Dicktoo-chilling-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.8	97.0	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4	96.6	GSM261060	Xantha b-12 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-2	38	Contig21916_at	Contig21916	-	-	4e-1	At2g42760	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	HM11F16r_at	HM11F16r	-	-	1e+0	At5g18180	Gar1 RNA-binding region family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7415_at	Contig7415	-	-	6e-29	At5g45020	-	C.G.	S.X.	Please select
0.01	1e+0	34	Contig9891_at	Contig9891	-	-	9e-10	At5g19150	carbohydrate kinase family	C.G.	S.X.	Please select
0.01	1e+0	34	Contig16015_at	Contig16015	-	-	3e-2	At2g23050	NPY4 (NAKED PINS IN YUC MUTANTS 4)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig8336_at	Contig8336	-	-	1e-7	At5g24610	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7030_at	Contig7030	-	-	9e-1	At1g15740	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig1643_s_at	Contig1643	-	-	2e-76	At3g58610	ketol-acid reductoisomerase	C.G.	S.X.	Please select
0.02	5e+0	32	HA12D17u_at	HA12D17u	-	-	3e-1	At4g22360	SWIB complex BAF60b domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At1g51730	841598	RWD domain-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	5e-2	40	Glycine max	HgAffx.13080.1.S1_at	CB826180	-	-	1e+0	At1g73550	lipid binding	C.G.	S.X.	Please select
0.39	4e-65	250	Oryza sativa	OsAffx.24325.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	2e-4	48	Populus trichocarpa	PtpAffx.200524.1.S1_at	pmrna1055	hypothetical protein	-	1e-30	At1g50170	ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	0	946	Triticum aestivum	Ta.10795.1.S1_x_at	BQ483940	-	-	6e-1	At1g28580	GDSL-motif lipase, putative	C.G.	S.X.	Please select
0.03	7e-1	34	Vitis vinifera	1613646_at	CD797643	hypothetical protein LOC100244073	-	1e-16	At1g50170	ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B)	C.G.	S.X.	Please select
0.30	5e-46	184	Zea mays	Zm.783.2.A1_at	BM348433	hypothetical protein LOC100193969	-	8e-2	At1g50170	ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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