Gene omics information

Query gene ID	Contig11436_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig11436_at	Contig11436	-	-	5e-23	At2g03270	DNA-binding protein, putative	S.X.	H.G.	Please select
0.80	92.5	Contig11434_at	Contig11434	-	-	3e-20	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	S.X.	H.G.	Please select
0.50	66.9	Contig8287_at	Contig8287	-	-	4e-65	At2g16440	DNA replication licensing factor, putative	S.X.	H.G.	Please select
0.40	53.1	Contig5782_at	Contig5782	-	-	9e-3	At5g63740	zinc finger protein-related	S.X.	H.G.	Please select
0.20	21.1	Contig3527_at	Contig3527	-	-	4e-169	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	S.X.	H.G.	Please select
0.11	9.4	Contig23462_at	Contig23462	-	-	5e+0	At5g43770	proline-rich family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.9	98.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.7	98.6	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
7.5	98.6	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3	98.1	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.0	97.9	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3	97.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3	97.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9	97.1	GSM363467	10 mM B(OH)3 treatment (10B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
4.3	96.4	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-4	46	Contig9063_at	Contig9063	-	-	8e-23	At4g30100	tRNA-splicing endonuclease positive effector-related	C.G.	S.X.	Please select
0.01	8e-2	38	Contig10468_at	Contig10468	-	-	2e-1	At4g33467	unknown protein	C.G.	S.X.	Please select
0.01	8e-2	38	Contig6581_at	Contig6581	-	-	6e-2	At3g26330	CYP71B37	C.G.	S.X.	Please select
0.02	3e-1	36	HV01L21w_at	HV01L21w	-	-	2e-4	At1g23290	RPL27AB	C.G.	S.X.	Please select
0.02	1e+0	34	Contig21191_at	Contig21191	-	-	4e-1	At2g30570	PSBW (PHOTOSYSTEM II REACTION CENTER W)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig19659_at	Contig19659	-	-	4e-19	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig12741_at	Contig12741	-	-	1e+0	At2g02030	F-box family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig7662_at	Contig7662	-	-	5e+0	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	C.G.	S.X.	Please select
0.02	5e+0	32	EBro08_SQ007_H08_at	EBro08_SQ007_H08	-	-	9e-1	At5g40220	AGL43 (AGAMOUS-LIKE 43)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	5e-23	109	Arabidopsis thaliana	At2g03270	814856	DNA-binding protein, putative	F:nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding;P:unknown;C:cellular_component unknown;BMOFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	4e-40	167	Glycine max	GmaAffx.73807.1.S1_at	AW508391	-	-	1e-43	At2g03270	DNA-binding protein, putative	C.G.	S.X.	Please select
0.43	4e-136	486	Oryza sativa	Os03g0586900	AK099721.1	-	Putative DNA helicase family protein	3e-23	At2g03270	DNA-binding protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	6e-11	69	Populus trichocarpa	PtpAffx.19573.1.A1_at	CV277083	hypothetical protein	-	2e-31	At2g03270	DNA-binding protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	0	1255	Triticum aestivum	Ta.27678.1.S1_at	BJ237635	-	-	1e-9	At2g03270	DNA-binding protein, putative	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1609606_at	CF403116	hypothetical protein LOC100253864	-	4e+0	At1g28360	ERF12 (ERF DOMAIN PROTEIN 12)	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.2385.1.S1_at	AF531431.1	DNA-binding protein	-	8e-10	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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