Gene omics information

Query gene ID	Contig1140_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	58.9	Contig1140_at	Contig1140	-	-	3e-17	At1g07790	HTB1	S.X.	H.G.	Please select
0.29	35.5	Contig8615_at	Contig8615	-	-	2e+0	At5g24870	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.21	22.6	Contig21112_at	Contig21112	-	-	6e+0	At5g23360	GRAM domain-containing protein / ABA-responsive protein-related	S.X.	H.G.	Please select
0.19	19.6	Contig13884_at	Contig13884	-	-	3e-5	At2g37510	RNA-binding protein, putative	S.X.	H.G.	Please select
0.10	8.4	HVSMEl0002M03r2_x_at	HVSMEl0002M03r2	-	-	4e+1	At5g55630	ATKCO1	S.X.	H.G.	Please select
0.09	7.4	Contig24376_at	Contig24376	-	-	6e+0	At5g59950	RNA and export factor-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.8	99.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.6	99.5	GSM68890	3 h control replicate 2	GSE3097	Barley1 salinity stress study
11.5	99.3	GSM68902	27 h control replicate 2	GSE3097	Barley1 salinity stress study
11.0	99.2	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.5	99.0	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
9.1	98.9	GSM68896	8 h control replicate 2	GSE3097	Barley1 salinity stress study
9.0	98.9	GSM68891	3 h control replicate 3	GSE3097	Barley1 salinity stress study
8.7	98.9	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
8.7	98.9	GSM68903	27 h control replicate3	GSE3097	Barley1 salinity stress study
8.6	98.8	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.81	0	944	Contig1156_at	Contig1156	-	-	4e-10	At1g07790	HTB1	C.G.	S.X.	Please select
0.66	0	819	Contig1141_s_at	Contig1141	-	-	2e-12	At1g07790	HTB1	C.G.	S.X.	Please select
0.67	0	807	Contig1157_at	Contig1157	-	-	6e-15	At1g07790	HTB1	C.G.	S.X.	Please select
0.67	0	769	Contig1162_at	Contig1162	-	-	4e-13	At1g07790	HTB1	C.G.	S.X.	Please select
0.64	0	751	Contig1136_at	Contig1136	-	-	7e-12	At1g07790	HTB1	C.G.	S.X.	Please select
0.60	0	670	Contig1158_x_at	Contig1158	-	-	7e-12	At1g07790	HTB1	C.G.	S.X.	Please select
0.61	0	662	Contig1123_s_at	Contig1123	-	-	4e-13	At1g07790	HTB1	C.G.	S.X.	Please select
0.57	0	654	Contig1181_x_at	Contig1181	-	-	8e-15	At5g59910	HTB4	C.G.	S.X.	Please select
0.60	6e-180	628	Contig1151_s_at	Contig1151	-	-	1e-7	At3g09480	histone H2B, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	3e-17	89	Arabidopsis thaliana	At1g07790	837293	HTB1	Encodes a histone 2B (H2B) protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.45	9e-55	214	Glycine max	Gma.16885.1.S1_at	AW570537	-	-	4e-31	At3g45980	HTB9	C.G.	S.X.	Please select
0.54	1e-134	480	Oryza sativa	Os01g0152300	CF291303	-	Histone H2B.1	8e-24	At1g07790	HTB1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	1e-7	57	Populus trichocarpa	PtpAffx.1169.2.S1_s_at	CX657913	-	-	2e-42	At3g46030	HTB11	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	2e-144	511	Triticum aestivum	Ta.7378.21.S1_at	BJ310041	Histone H2B	-	6e-18	At1g07790	HTB1	C.G.	S.X.	Please select
0.51	1e-19	95	Vitis vinifera	1615448_at	CF568935	-	-	1e-61	At5g59910	HTB4	C.G.	S.X.	Please select
0.61	1e-156	551	Zea mays	Zm.14497.4.A1_at	CF631109	-	-	4e-13	At1g07790	HTB1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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