Gene omics information

Query gene ID	Contig1139_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig1139_s_at	Contig1139	-	-	1e-19	At3g07110	60S ribosomal protein L13A (RPL13aA)	S.X.	H.G.	Please select
0.75	89.5	HY03E10u_s_at	HY03E10u	-	-	1e+1	At5g63060	transporter	S.X.	H.G.	Please select
0.73	88.7	Contig13274_at	Contig13274	-	-	9e-3	At1g71690	unknown protein	S.X.	H.G.	Please select
0.63	80.3	Contig20455_at	Contig20455	-	-	2e+0	At5g48220	indole-3-glycerol phosphate synthase, putative	S.X.	H.G.	Please select
0.59	75.8	Contig1434_s_at	Contig1434	-	-	2e-1	At5g58580	ATL63 (ARABIDOPSIS TÓ	S.X.	H.G.	Please select
0.57	74.9	Contig7911_at	Contig7911	-	-	2e-4	At4g28400	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.50	66.9	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.2	98.0	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.2	98.0	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.8	97.8	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.6	97.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.3	97.4	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.3	97.4	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.2	97.4	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.2	97.4	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.63	0	642	HS08G12u_at	HS08G12u	-	-	6e-2	At5g48760	60S ribosomal protein L13A (RPL13aD)	C.G.	S.X.	Please select
0.56	9e-161	565	Contig1170_at	Contig1170	-	-	3e-21	At3g07110	60S ribosomal protein L13A (RPL13aA)	C.G.	S.X.	Please select
0.33	2e-131	468	HA07i01r_at	HA07i01r	-	-	1e+0	At4g31930	mitochondrial glycoprotein family protein / MAM33 family protein	C.G.	S.X.	Please select
0.51	1e-104	379	Contig1175_s_at	Contig1175	-	-	2e-21	At3g07110	60S ribosomal protein L13A (RPL13aA)	C.G.	S.X.	Please select
0.51	1e-104	379	Contig1175_at	Contig1175	-	-	2e-21	At3g07110	60S ribosomal protein L13A (RPL13aA)	C.G.	S.X.	Please select
0.36	2e-87	321	HY09A03u_at	HY09A03u	-	-	8e+0	At3g16440	ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)	C.G.	S.X.	Please select
0.02	8e-4	44	Contig19391_at	Contig19391	-	-	9e-3	At3g01260	aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase	C.G.	S.X.	Please select
0.02	2e-1	36	Contig21274_at	Contig21274	-	-	3e-9	At5g07180	ERL2 (ERECTA-LIKE 2)	C.G.	S.X.	Please select
0.03	2e-1	36	Contig20773_at	Contig20773	-	-	3e-1	At2g22080	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	1e-19	97	Arabidopsis thaliana	At3g07110	819897	60S ribosomal protein L13A (RPL13aA)	F:structural constituent of ribosome;P:translation;C:in 6 components;BOMAPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.32	1e-39	165	Glycine max	GmaAffx.43889.1.S1_s_at	AW472039	-	-	3e-26	At4g13170	60S ribosomal protein L13A (RPL13aC)	C.G.	S.X.	Please select
0.66	0	858	Oryza sativa	Os03g0756000	AK106078.1	-	60S ribosomal protein L13a	6e-7	At5g48760	60S ribosomal protein L13A (RPL13aD)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	4e-14	79	Populus trichocarpa	Ptp.2448.1.S1_at	CV233899	hypothetical protein	-	5e-57	At3g24830	60S ribosomal protein L13A (RPL13aB)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	1223	Triticum aestivum	Ta.807.1.S1_a_at	CK212376	ribosomal protein L13a	-	7e-16	At3g07110	60S ribosomal protein L13A (RPL13aA)	C.G.	S.X.	Please select
0.23	1e-60	232	Vitis vinifera	1608162_at	BQ796557	hypothetical protein LOC100267451	-	1e-54	At3g07110	60S ribosomal protein L13A (RPL13aA)	C.G.	S.X.	Please select
0.57	1e-150	531	Zea mays	Zm.4020.2.A1_at	BM381719	-	-	8e-9	At5g48760	60S ribosomal protein L13A (RPL13aD)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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