Gene omics information

Query gene ID	Contig11287_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig11287_s_at	Contig11287	-	-	1e+0	At5g15960	KIN1	S.X.	H.G.	Please select
0.67	84.7	Contig16253_at	Contig16253	-	-	7e+0	At5g48515	-	S.X.	H.G.	Please select
0.53	69.7	Contig20219_at	Contig20219	-	-	1e-2	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	S.X.	H.G.	Please select
0.50	66.9	Contig10972_at	Contig10972	-	-	1e-5	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	S.X.	H.G.	Please select
0.40	53.1	Contig5728_at	Contig5728	-	-	1e-15	At3g06483	PDK (PYRUVATE DEHYDROGENASE KINASE)	S.X.	H.G.	Please select
0.33	42.6	Contig18431_at	Contig18431	-	-	9e-2	At1g78530	protein kinase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.4	99.4	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.5	99.3	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.2	99.2	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.4	99.2	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.1	99.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.0	99.1	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.8	99.1	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.0	98.7	GSM261062	Xantha s-46 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4	98.1	GSM261056	Xantha b-12 Cotrol rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3	98.1	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.84	0	809	Contig11288_x_at	Contig11288	-	-	1e+0	At5g15960	KIN1	C.G.	S.X.	Please select
0.66	2e-102	371	Contig18705_at	Contig18705	-	-	4e+0	At2g01640	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	36	rbags21b15_at	rbags21b15	-	-	1e+0	At5g57887	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Contig3842_s_at	Contig3842	-	-	1e-3	At1g01470	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	C.G.	S.X.	Please select
0.03	1e-1	36	Contig3842_at	Contig3842	-	-	1e-3	At1g01470	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	C.G.	S.X.	Please select
0.04	5e-1	34	EBro03_SQ004_E10_at	EBro03_SQ004_E10	-	-	3e+0	At4g20290	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Contig2970_s_at	Contig2970	-	-	4e-1	At2g17560	HMGB4 (HIGH MOBILITY GROUP B 4)	C.G.	S.X.	Please select
0.03	5e-1	34	Contig22985_at	Contig22985	-	-	4e-1	At4g30590	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig5123_at	Contig5123	-	-	3e+0	At3g05858	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e+0	34	Arabidopsis thaliana	At5g15960	831453	KIN1	cold and ABA inducible protein kin1, possibly functions as an anti-freeze protein. Transcript level of this gene is induced by cold, ABA, dehydration and osmoticum (mannitol). However, protein activity of GUS fused to the promoter of this gene is inhibited by cold treatment, suggesting an inhibition of the protein by increased transcript level.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e+0	34	Glycine max	PsAffx.CL577Contig1_at	PsAffx.CL577Contig1	-	-	2e-2	At5g15960	KIN1	C.G.	S.X.	Please select
0.04	5e-1	36	Oryza sativa	Os.6732.3.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Populus trichocarpa	PtpAffx.221351.1.S1_s_at	pmrna38197	hypothetical protein	-	7e-2	At4g24275	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.8388.1.S1_at	CA626252	-	-	7e-2	At5g15960	KIN1	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1613989_at	CF414043	-	-	7e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.03	4e-1	34	Zea mays	Zm.6225.1.A1_at	CB251995	hypothetical protein LOC100274530	-	1e-10	At1g23290	RPL27AB	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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