Gene omics information

Query gene ID	Contig11225_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig11225_at	Contig11225	-	-	7e+0	At5g13220	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	S.X.	H.G.	Please select
0.55	72.0	Contig24721_at	Contig24721	-	-	5e+0	At2g41990	unknown protein	S.X.	H.G.	Please select
0.55	72.0	HK06I18r_at	HK06I18r	-	-	1e+0	At2g40475	unknown protein	S.X.	H.G.	Please select
0.53	69.7	Contig2169_at	Contig2169	-	-	1e+1	At5g51105	unknown protein	S.X.	H.G.	Please select
0.52	68.3	Contig1340_at	Contig1340	-	-	2e-55	At5g21274	CAM6 (CALMODULIN 6)	S.X.	H.G.	Please select
0.49	63.7	Contig10596_at	Contig10596	-	-	8e-10	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	S.X.	H.G.	Please select
0.43	56.4	Contig20828_at	Contig20828	-	-	3e-1	At4g15360	CYP705A3	S.X.	H.G.	Please select
0.41	53.9	HU09H10u_at	HU09H10u	-	-	1e+1	At4g09647	-	S.X.	H.G.	Please select
0.40	53.1	Contig12959_at	Contig12959	-	-	4e-3	At1g31650	ROPGEF14	S.X.	H.G.	Please select
0.40	53.1	HI04I05u_at	HI04I05u	-	-	2e-2	At5g41060	zinc finger (DHHC type) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
46.2	99.9	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.1	99.4	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.5	99.3	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.3	99.1	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.9	98.9	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.7	98.9	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.3	98.8	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.6	98.6	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.2	98.5	GSM373002	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.9	98.3	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	2e-112	404	HVSMEb0007D06r2_x_at	HVSMEb0007D06r2	-	-	4e+0	At3g52540	OFP18 (OVATE FAMILY PROTEIN 18)	C.G.	S.X.	Please select
0.14	6e-8	57	Contig4813_at	Contig4813	-	-	1e+0	At1g70700	TIFY7	C.G.	S.X.	Please select
0.06	1e-5	50	HVSMEb0011I17r2_s_at	HVSMEb0011I17r2	-	-	2e+0	At1g70700	TIFY7	C.G.	S.X.	Please select
0.05	1e-5	50	Contig4816_x_at	Contig4816	-	-	5e+0	At1g70700	TIFY7	C.G.	S.X.	Please select
0.09	1e-5	50	Contig4815_at	Contig4815	-	-	1e+0	At5g24318	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please select
0.05	1e-5	50	Contig4816_at	Contig4816	-	-	5e+0	At1g70700	TIFY7	C.G.	S.X.	Please select
0.02	2e-4	46	Contig5066_at	Contig5066	-	-	7e-1	At3g42310	unknown protein	C.G.	S.X.	Please select
0.04	9e-4	44	Contig3205_at	Contig3205	-	-	3e-7	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	C.G.	S.X.	Please select
0.04	9e-4	44	Contig3205_s_at	Contig3205	-	-	3e-7	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e+0	32	Arabidopsis thaliana	At5g13220	831162	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	6e-1	36	Glycine max	PsAffx.C99000015_at	PsAffx.C99000015	-	-	7e+0	At4g26701	DNA binding / DNA topoisomerase type I	C.G.	S.X.	Please select
0.20	3e-22	107	Oryza sativa	Os03g0181100	AK120087.1	-	ZIM domain containing protein	2e+0	At3g59370	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e-1	38	Populus trichocarpa	PtpAffx.219232.1.S1_at	pmrna35089	hypothetical protein	-	5e+0	At3g21465	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.52	1e-44	180	Triticum aestivum	Ta.30507.1.S1_a_at	CK214499	-	-	2e+0	At5g35230	unknown protein	C.G.	S.X.	Please select
0.04	8e+0	30	Vitis vinifera	1622716_at	CF201892.1	-	-	1e+1	At5g62165	AGL42 (AGAMOUS LIKE 42)	C.G.	S.X.	Please select
0.21	4e-27	121	Zea mays	Zm.10850.1.S1_at	AY106263.1	ZIM motif family protein	-	8e-1	At5g40420	OLEO2 (OLEOSIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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