Gene omics information

Query gene ID	Contig11220_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig11220_s_at	Contig11220	-	-	4e+0	At4g10160	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.55	72.0	Contig13083_at	Contig13083	-	-	2e-3	At5g05350	unknown protein	S.X.	H.G.	Please select
0.44	58.9	HM03H17u_at	HM03H17u	-	-	9e-1	At4g24980	-	S.X.	H.G.	Please select
0.36	47.1	Contig10604_at	Contig10604	-	-	1e-10	At1g18650	PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3)	S.X.	H.G.	Please select
0.24	27.2	Contig18318_at	Contig18318	-	-	2e+0	At4g23432	unknown protein	S.X.	H.G.	Please select
0.21	22.6	Contig10011_at	Contig10011	-	-	1e+0	At2g43290	MSS3 (multicopy suppressors of snf4 deficiency in yeast 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.2	99.5	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.0	99.2	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.4	99.0	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.3	99.0	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.7	98.9	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.8	98.6	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.3	98.5	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
7.3	98.5	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
6.9	98.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
6.4	98.1	GSM363464	5 mM B(OH)3 treatment (5B) - rep2	GSE14521	Late response to boron toxicity in barley leaves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.70	0	1063	Contig11221_at	Contig11221	-	-	2e-6	At2g21320	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.03	1e-1	36	HVSMEg0010M12r2_at	HVSMEg0010M12r2	-	-	2e-8	At1g74880	NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)	C.G.	S.X.	Please select
0.04	1e-1	36	Contig14168_s_at	Contig14168	-	-	4e-18	At1g74880	NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)	C.G.	S.X.	Please select
0.03	2e+0	32	Contig22602_at	Contig22602	-	-	8e-1	At5g01700	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Contig8457_at	Contig8457	-	-	2e-5	At2g22080	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Contig24772_at	Contig24772	-	-	1e-4	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select
0.01	2e+0	32	Contig7206_at	Contig7206	-	-	9e-1	At3g19510	HAT3.1	C.G.	S.X.	Please select
0.02	2e+0	32	Contig6435_at	Contig6435	-	-	4e-49	At4g37870	PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1)	C.G.	S.X.	Please select
0.02	8e+0	30	Contig3151_at	Contig3151	-	-	2e-3	At5g39190	GER2 (GERMIN-LIKE PROTEIN 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At4g10160	826607	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.55121.1.A1_at	BI970422	-	-	7e-1	At3g10990	F-box family protein	C.G.	S.X.	Please select
0.11	1e-11	71	Oryza sativa	Os09g0527900	AK122172.1	-	Hd1-like protein	1e-5	At2g21320	zinc finger (B-box type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.51910.1.S1_at	CK106924	hypothetical protein	-	4e-3	At3g05520	F-actin capping protein alpha subunit family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.68	1e-142	506	Triticum aestivum	Ta.30583.1.S1_at	BQ166648	-	-	9e-1	At1g54590	splicing factor Prp18 family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1620701_at	CF415290	-	-	4e+0	At5g50930	DNA binding	C.G.	S.X.	Please select
0.20	2e-19	95	Zea mays	Zm.3987.1.S1_at	AY111725.1	hypothetical protein LOC100193329	-	1e-8	At4g38960	zinc finger (B-box type) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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