Gene omics information

Query gene ID	Contig11177_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig11177_at	Contig11177	-	-	5e-1	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select
0.60	77.3	Contig4910_at	Contig4910	-	-	3e+0	At5g09280	pectate lyase family protein	S.X.	H.G.	Please select
0.46	61.0	Contig26369_at	Contig26369	-	-	4e+0	At4g02620	vacuolar ATPase subunit F family protein	S.X.	H.G.	Please select
0.40	53.1	Contig13884_at	Contig13884	-	-	3e-5	At2g37510	RNA-binding protein, putative	S.X.	H.G.	Please select
0.40	53.1	Contig7087_at	Contig7087	-	-	8e-1	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	S.X.	H.G.	Please select
0.14	12.9	Contig8505_s_at	Contig8505	-	-	2e+0	At5g18280	ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.3	99.4	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
12.1	99.3	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
8.2	98.7	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
8.0	98.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.9	98.7	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
7.8	98.6	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM160815	drought control rep3	GSE6990	Barley drought stress
5.4	97.5	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
5.2	97.4	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	34	Contig5762_at	Contig5762	-	-	1e-11	At5g04430	BTR1L (BINDING TO TOMV RNA 1L (LONG FORM))	C.G.	S.X.	Please select
0.02	1e+0	34	Contig15456_at	Contig15456	-	-	9e-2	At1g49310	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig1521_at	Contig1521	-	-	6e-2	At2g31840	-	C.G.	S.X.	Please select
0.01	1e+0	34	Contig15443_at	Contig15443	-	-	1e+1	At5g56060	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	C.G.	S.X.	Please select
0.01	1e+0	34	Contig5146_at	Contig5146	-	-	4e-21	At1g76690	OPR2	C.G.	S.X.	Please select
0.02	4e+0	32	Contig7809_at	Contig7809	-	-	9e-5	At5g46030	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Contig17632_at	Contig17632	-	-	2e+0	At4g11655	transmembrane protein, putative	C.G.	S.X.	Please select
0.02	4e+0	32	Contig16371_at	Contig16371	-	-	4e+0	At5g53560	CB5-E (CYTOCHROME B5 ISOFORM E)	C.G.	S.X.	Please select
0.02	4e+0	32	Contig26236_at	Contig26236	-	-	1e-6	At1g76820	GTP binding / GTPase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	At5g53730	835454	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e-1	36	Glycine max	GmaAffx.784.1.A1_at	BE822911	-	-	2e-1	At3g53330	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.19	2e-57	224	Oryza sativa	Os03g0246500	AK066916.1	-	Plant protein of unknown function DUF869 familyprotein	6e-10	At1g47900	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-3	44	Populus trichocarpa	Ptp.3104.1.S1_at	CK093584	hypothetical protein	-	9e-5	At1g19835	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.72	0	1269	Triticum aestivum	Ta.7290.1.S1_x_at	CA722757	-	-	7e-1	At3g23610	dual specificity protein phosphatase (DsPTP1)	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1614903_at	CF213705	hypothetical protein LOC100258657	-	6e-3	At5g47630	mtACP3 (mitochondrial acyl carrier protein 3)	C.G.	S.X.	Please select
0.54	3e-59	228	Zea mays	Zm.3743.2.A1_at	CF624095	hypothetical protein LOC100274177	-	2e+0	At5g04045	Expressed protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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