Gene omics information

Query gene ID	Contig11145_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	98.4	Contig11145_at	Contig11145	-	-	1e-1	At3g21970	receptor-like protein kinase-related	S.X.	H.G.	Please select
0.31	38.6	Contig10441_at	Contig10441	-	-	2e+0	At1g43722	unknown protein	S.X.	H.G.	Please select
0.25	28.9	HT07O19u_s_at	HT07O19u	-	-	2e+0	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	S.X.	H.G.	Please select
0.11	9.4	Contig20382_at	Contig20382	-	-	4e-1	At1g53910	RAP2.12	S.X.	H.G.	Please select
0.10	8.4	HX03D08u_s_at	HX03D08u	-	-	6e-1	At1g04960	-	S.X.	H.G.	Please select
0.07	5.8	Contig23066_at	Contig23066	-	-	1e+0	At5g54890	RNA binding	S.X.	H.G.	Please select
0.03	2.6	HV_CEa0014J08r2_at	HV_CEa0014J08r2	-	-	4e+0	At5g49050	-	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.7	99.2	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
10.6	99.2	GSM372957	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.8	98.6	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
7.5	98.6	GSM363467	10 mM B(OH)3 treatment (10B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
7.5	98.6	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.4	98.5	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.6	98.2	GSM398280	Moroc9-75_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.6	98.2	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.4	98.1	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.3	98.1	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	34	Contig12610_at	Contig12610	-	-	5e-17	At3g20330	aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB)	C.G.	S.X.	Please select
0.03	8e-1	34	HM11C20r_at	HM11C20r	-	-	4e+0	At3g55890	yippee family protein	C.G.	S.X.	Please select
0.01	8e-1	34	Contig6767_s_at	Contig6767	-	-	2e-11	At1g13640	phosphatidylinositol 3- and 4-kinase family protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig14620_at	Contig14620	-	-	1e+0	At5g35069	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	34	Contig5574_at	Contig5574	-	-	2e-11	At4g30210	ATR2 (ARABIDOPSIS P450 REDUCTASE 2)	C.G.	S.X.	Please select
0.01	8e-1	34	Contig5275_at	Contig5275	-	-	3e-22	At3g13510	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	34	Contig4653_at	Contig4653	-	-	6e-21	At4g30210	ATR2 (ARABIDOPSIS P450 REDUCTASE 2)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig1615_s_at	Contig1615	-	-	2e-103	At5g42020	BIP2	C.G.	S.X.	Please select
0.01	3e+0	32	Contig1615_at	Contig1615	-	-	2e-103	At5g42020	BIP2	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At3g21970	821756	receptor-like protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-2	40	Glycine max	GmaAffx.89508.1.A1_s_at	CK606172	-	-	4e-1	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.40	2e-60	234	Oryza sativa	Os10g0419500	AK071316.1	-	Acireductone dioxygenase, ARD family protein	2e-10	At5g43850	ARD4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	6e-7	56	Populus trichocarpa	PtpAffx.122088.1.S1_at	AJ774512	hypothetical protein	-	4e-13	At5g43850	ARD4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.65	0	946	Triticum aestivum	Ta.13262.1.S1_at	CK200154	-	-	1e-1	At5g43850	ARD4	C.G.	S.X.	Please select
0.18	3e-14	77	Vitis vinifera	1619786_at	CA814509	-	-	1e-22	At5g43850	ARD4	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.5792.2.A1_at	AY106767.1	-	-	1e+0	At4g39990	RABA4B (RAB GTPASE HOMOLOG A4B)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage