CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig10956_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 75.8 Contig10956_at Contig10956 - - 4e-1 At2g16800 high-affinity nickel-transport family protein S.X. H.G.
0.80 92.5 Contig5296_at Contig5296 - - 4e-25 At1g64550 ATGCN3 S.X. H.G.
0.67 84.7 HX01C23w_s_at HX01C23w - - 5e+0 At5g17165 unknown protein S.X. H.G.
0.44 58.9 Contig13550_at Contig13550 - - 7e-7 At5g42660 unknown protein S.X. H.G.
0.34 43.6 Contig1788_at Contig1788 - - 8e-27 At1g65930 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative S.X. H.G.
0.22 24.2 Contig14241_at Contig14241 - - 2e+0 At3g16250 NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.9 98.7 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.5 98.6 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
7.3 98.5 GSM372981 genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.9 98.3 GSM372964 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.9 98.3 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.9 97.9 GSM372985 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.9 97.9 GSM372982 genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.7 97.7 GSM373002 genotype: 11542 - pathogen isolates: K1 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.3 97.4 GSM372987 genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.2 97.4 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-2 38 Contig8906_at Contig8906 - - 2e-1 At4g26780 AR192 C.G. S.X.
0.01 8e-1 34 Contig7148_at Contig7148 - - 5e-2 At2g28910 CXIP4 (CAX INTERACTING PROTEIN 4) C.G. S.X.
0.02 3e+0 32 Contig4518_s_at Contig4518 - - 2e+0 At5g53420 - C.G. S.X.
0.02 3e+0 32 Contig4518_at Contig4518 - - 2e+0 At5g53420 - C.G. S.X.
0.02 3e+0 32 HS16K21u_at HS16K21u - - 3e-10 At1g25560 TEM1 (TEMPRANILLO 1) C.G. S.X.
0.03 3e+0 32 HZ51M12r_s_at HZ51M12r - - 5e+0 At5g38197 - C.G. S.X.
0.02 3e+0 32 Contig17167_at Contig17167 - - 2e-10 At2g44770 phagocytosis and cell motility protein ELMO1-related C.G. S.X.
0.02 3e+0 32 Contig18680_at Contig18680 - - 1e+0 At4g38680 GRP2 (GLYCINE RICH PROTEIN 2) C.G. S.X.
0.02 3e+0 32 Contig15532_at Contig15532 - - 3e-17 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-1 36 Arabidopsis thaliana At2g16800 816181 high-affinity nickel-transport family protein F:nickel ion transmembrane transporter activity, metal ion binding;P:nickel ion transport, metal ion transport;C:integral to membrane, chloroplast;OBPA - - - C.G. S.X.
0.11 6e-7 56 Glycine max Gma.2521.1.S1_at AI900841 - - 1e-26 At2g16800 high-affinity nickel-transport family protein C.G. S.X.
0.48 5e-76 286 Oryza sativa Os03g0156700 AK108804.1 - High-affinity nickel-transporter family protein 3e-6 At4g35080 high-affinity nickel-transport family protein C.G. S.X.
0.05 6e-1 36 Populus trichocarpa PtpAffx.158453.1.S1_at AJ768512 hypothetical protein - 3e-10 At2g16800 high-affinity nickel-transport family protein C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.23205.1.S1_at CA739205 - - 3e-2 At4g23230 protein kinase family protein C.G. S.X.
0.11 5e-10 63 Vitis vinifera 1620542_at CB344230 hypothetical protein LOC100255788 - 9e-31 At2g16800 high-affinity nickel-transport family protein C.G. S.X.
0.02 1e+1 30 Zea mays Zm.8815.1.A1_at BM335317 - - 4e-1 At2g31215 basic helix-loop-helix (bHLH) family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage