Gene omics information

Query gene ID	Contig10949_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.3	Contig10949_at	Contig10949	-	-	4e-6	At1g65730	YSL7 (YELLOW STRIPE LIKE 7)	S.X.	H.G.	Please select
0.86	94.8	Contig23245_at	Contig23245	-	-	5e-4	At5g60550	GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2)	S.X.	H.G.	Please select
0.64	80.9	rbasd18k05_s_at	rbasd18k05	-	-	1e+0	At2g23110	-	S.X.	H.G.	Please select
0.62	79.1	Contig7809_at	Contig7809	-	-	9e-5	At5g46030	unknown protein	S.X.	H.G.	Please select
0.47	62.2	Contig12905_at	Contig12905	-	-	2e+0	At1g13400	NUB (NUBBIN)	S.X.	H.G.	Please select
0.44	58.9	HZ52M04r_s_at	HZ52M04r	-	-	4e+0	At2g16385	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig20611_at	Contig20611	-	-	2e+0	At5g49130	MATE efflux family protein	S.X.	H.G.	Please select
0.44	58.9	Contig23295_at	Contig23295	-	-	5e+0	At3g10720	pectinesterase, putative	S.X.	H.G.	Please select
0.44	58.9	Contig19727_at	Contig19727	-	-	1e+0	At5g51790	basix helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.41	53.9	Contig20268_at	Contig20268	-	-	4e-1	At5g12140	ATCYS1 (A. thaliana cystatin-1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.0	99.8	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
19.3	99.7	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
18.5	99.7	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
18.2	99.7	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
17.9	99.7	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
17.0	99.6	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
17.0	99.6	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
15.7	99.6	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
8.6	98.8	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.6	98.8	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	5e-47	188	Contig20317_at	Contig20317	-	-	1e-17	At1g65730	YSL7 (YELLOW STRIPE LIKE 7)	C.G.	S.X.	Please select
0.25	1e-32	141	Contig13700_at	Contig13700	-	-	7e-16	At1g65730	YSL7 (YELLOW STRIPE LIKE 7)	C.G.	S.X.	Please select
0.07	2e-3	44	HVSMEa0012C22f_at	HVSMEa0012C22f	-	-	2e+0	At5g45450	iron transporter-related	C.G.	S.X.	Please select
0.01	7e-3	42	Contig7794_s_at	Contig7794	-	-	1e-25	At1g15130	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	1e-1	38	Contig16506_at	Contig16506	-	-	1e-13	At3g27020	YSL6 (YELLOW STRIPE LIKE 6)	C.G.	S.X.	Please select
0.01	1e-1	38	Contig10424_at	Contig10424	-	-	2e-14	At3g49350	RAB GTPase activator	C.G.	S.X.	Please select
0.01	1e-1	38	Contig16464_at	Contig16464	-	-	9e-6	At5g53550	YSL3 (YELLOW STRIPE LIKE 3)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig5490_at	Contig5490	-	-	3e-1	At3g14680	CYP72A14	C.G.	S.X.	Please select
0.02	4e-1	36	Contig1927_at	Contig1927	-	-	4e-12	At5g28840	GME (GDP-D-MANNOSE 3',5'-EPIMERASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	4e-6	54	Arabidopsis thaliana	At1g65730	842884	YSL7 (YELLOW STRIPE LIKE 7)	Arabidopsis thaliana metal-nicotianamine transporter YSL4	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	1e-6	56	Glycine max	GmaAffx.81949.1.S1_at	AW597388	-	-	1e-12	At1g48370	YSL8 (YELLOW STRIPE LIKE 8)	C.G.	S.X.	Please select
0.54	0	1189	Oryza sativa	Os02g0633300	9630.m04040	-	EspB-like protein	5e-12	At1g65730	YSL7 (YELLOW STRIPE LIKE 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	4e-19	97	Populus trichocarpa	PtpAffx.203789.1.S1_at	pmrna7477	oligopeptide transporter OPT family	-	7e-39	At3g17650	YSL5 (YELLOW STRIPE LIKE 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	0	1158	Triticum aestivum	TaAffx.94593.1.S1_at	CA733739	-	-	1e-1	At1g48370	YSL8 (YELLOW STRIPE LIKE 8)	C.G.	S.X.	Please select
0.08	2e-14	79	Vitis vinifera	1617990_s_at	CB969113	hypothetical protein LOC100249683	-	1e-16	At1g48370	YSL8 (YELLOW STRIPE LIKE 8)	C.G.	S.X.	Please select
0.25	2e-39	163	Zea mays	Zm.13487.1.A1_at	AY108830.1	transposon protein	-	2e-2	At5g41000	YSL4 (YELLOW STRIPE LIKE 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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