Gene omics information

Query gene ID	Contig10945_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.7	Contig10945_at	Contig10945	-	-	3e+0	At5g24110	WRKY30	S.X.	H.G.	Please select
0.61	78.7	Contig11477_at	Contig11477	-	-	8e-5	At1g79040	PSBR (photosystem II subunit R)	S.X.	H.G.	Please select
0.57	74.9	Contig2343_s_at	Contig2343	-	-	1e+0	At5g26010	catalytic/ protein serine/threonine phosphatase	S.X.	H.G.	Please select
0.56	74.3	Contig7360_at	Contig7360	-	-	3e+0	At4g19620	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig624_at	Contig624	-	-	3e-3	At2g31390	pfkB-type carbohydrate kinase family protein	S.X.	H.G.	Please select
0.31	38.6	Contig1512_at	Contig1512	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	97.9	GSM372992	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.7	97.7	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM373001	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4	96.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
4.1	96.2	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM372977	genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9	95.8	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8	95.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	9e-144	510	HK04G23r_s_at	HK04G23r	-	-	1e+1	At5g57280	methyltransferase	C.G.	S.X.	Please select
0.04	1e-13	77	rbaal21c15_at	rbaal21c15	-	-	1e+0	At5g52960	unknown protein	C.G.	S.X.	Please select
0.03	2e-6	54	Contig9064_at	Contig9064	-	-	7e+0	Atmg01260	-	C.G.	S.X.	Please select
0.03	6e-6	52	Contig14425_at	Contig14425	-	-	2e+0	At5g45710	RHA1 (ROOT HANDEDNESS 1)	C.G.	S.X.	Please select
0.02	4e-4	46	Contig17974_at	Contig17974	-	-	2e-3	At2g24550	unknown protein	C.G.	S.X.	Please select
0.02	4e-4	46	Contig7366_s_at	Contig7366	-	-	3e-1	At3g55450	protein kinase, putative	C.G.	S.X.	Please select
0.02	4e-4	46	Contig7366_at	Contig7366	-	-	3e-1	At3g55450	protein kinase, putative	C.G.	S.X.	Please select
0.02	6e-3	42	Contig18316_at	Contig18316	-	-	3e-1	At3g61770	-	C.G.	S.X.	Please select
0.03	6e-3	42	Contig6000_at	Contig6000	-	-	6e-1	At2g35585	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At5g24110	832476	WRKY30	member of WRKY Transcription Factor; Group III	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	GmaAffx.3541.2.S1_at	BM567757	-	-	8e-1	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	C.G.	S.X.	Please select
0.01	9e-2	40	Oryza sativa	Os05g0318700	AK120223.1	-	Resistance protein candidate (Fragment)	1e-10	At3g51550	FER (FERONIA)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.151541.1.A1_at	DN492061	-	-	8e+0	At4g37925	NDH-M (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	9e-10	65	Triticum aestivum	Ta.3543.1.A1_at	BJ220370	-	-	3e-1	At2g17785	zinc-binding protein-related	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1616987_at	CF373531	-	-	7e-1	At2g23960	defense-related protein, putative	C.G.	S.X.	Please select
0.01	5e+0	32	Zea mays	Zm.6651.1.A1_at	BM349622	-	-	5e+0	At4g13170	60S ribosomal protein L13A (RPL13aC)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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