Gene omics information

Query gene ID	Contig10896_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig10896_at	Contig10896	-	-	5e-41	At3g03120	ATARFB1C (ADP-ribosylation factor B1C)	S.X.	H.G.	Please select
0.55	72.0	Contig1641_at	Contig1641	-	-	1e-5	At5g20340	BG5 (beta-1,3-glucanase 5)	S.X.	H.G.	Please select
0.50	66.9	Contig8323_at	Contig8323	-	-	3e+0	Atmg00890	-	S.X.	H.G.	Please select
0.43	56.4	Contig16932_at	Contig16932	-	-	6e-1	At3g17030	-	S.X.	H.G.	Please select
0.33	42.6	Contig9875_at	Contig9875	-	-	9e-3	At3g29100	VTI13	S.X.	H.G.	Please select
0.11	9.4	Contig8857_at	Contig8857	-	-	4e-1	At2g37600	60S ribosomal protein L36 (RPL36A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	98.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
5.8	97.8	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.3	97.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	1e-77	289	Contig8507_at	Contig8507	-	-	2e-43	At3g03120	ATARFB1C (ADP-ribosylation factor B1C)	C.G.	S.X.	Please select
0.08	7e-5	48	Contig395_s_at	Contig395	-	-	8e-111	At1g70490	ARFA1D	C.G.	S.X.	Please select
0.09	7e-5	48	Contig93_at	Contig93	-	-	3e-107	At1g70490	ARFA1D	C.G.	S.X.	Please select
0.02	2e-2	40	Contig652_at	Contig652	-	-	5e-78	At1g70490	ARFA1D	C.G.	S.X.	Please select
0.04	6e-2	38	Contig969_at	Contig969	-	-	1e-72	At1g70490	ARFA1D	C.G.	S.X.	Please select
0.07	6e-2	38	Contig200_at	Contig200	-	-	2e-121	At1g70490	ARFA1D	C.G.	S.X.	Please select
0.02	6e-2	38	Contig17518_at	Contig17518	-	-	6e-3	At1g11260	STP1 (SUGAR TRANSPORTER 1)	C.G.	S.X.	Please select
0.03	6e-2	38	Contig1008_x_at	Contig1008	-	-	4e-12	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	C.G.	S.X.	Please select
0.02	2e-1	36	Contig24694_at	Contig24694	-	-	4e-1	At4g25280	adenylate kinase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	5e-41	169	Arabidopsis thaliana	At3g03120	821079	ATARFB1C (ADP-ribosylation factor B1C)	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster}, other ARFs and ARF-like proteins.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	9e-22	105	Glycine max	Gma.4171.1.S1_at	CD401267	-	-	1e-79	At5g17060	ATARFB1B	C.G.	S.X.	Please select
0.48	0	652	Oryza sativa	Os10g0580200	AK070151.1	-	ADP-ribosylation factor (Fragment)	1e-32	At3g03120	ATARFB1C (ADP-ribosylation factor B1C)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	2e-47	190	Populus trichocarpa	PtpAffx.125245.1.S1_a_at	CV238462	hypothetical protein	-	1e-47	At5g17060	ATARFB1B	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.78	0	1277	Triticum aestivum	Ta.549.1.S1_at	BJ251585	-	-	3e-43	At3g03120	ATARFB1C (ADP-ribosylation factor B1C)	C.G.	S.X.	Please select
0.38	4e-45	180	Vitis vinifera	1606718_at	CA817648	hypothetical protein LOC100254624	-	2e-93	At5g17060	ATARFB1B	C.G.	S.X.	Please select
0.41	4e-163	573	Zea mays	Zm.6240.1.A1_at	CA405024	hypothetical protein LOC100192068	-	1e-33	At3g03120	ATARFB1C (ADP-ribosylation factor B1C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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