CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig10887_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 77.3 Contig10887_at Contig10887 - - 3e-10 At1g53390 ATPase, coupled to transmembrane movement of substances S.X. H.G.
0.67 84.7 HO15C14S_s_at HO15C14S - - 2e+0 At5g55210 unknown protein S.X. H.G.
0.67 84.7 baak1o23_s_at baak1o23 - - 1e+1 At4g18070 unknown protein S.X. H.G.
0.53 69.7 Contig223_s_at Contig223 - - 8e-1 At5g56900 CwfJ-like family protein / zinc finger (CCCH-type) family protein S.X. H.G.
0.43 56.4 HVSMEh0085G19f_at HVSMEh0085G19f - - 3e+0 At1g75510 transcription initiation factor IIF beta subunit (TFIIF-beta) family protein S.X. H.G.
0.22 24.2 Contig14349_at Contig14349 - - 1e+1 Atmg00010 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.2 99.6 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
14.8 99.5 GSM372981 genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.3 99.4 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
10.5 99.2 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.3 98.8 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
7.7 98.6 GSM372987 genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.3 98.5 GSM372986 genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.1 98.0 GSM146361 Golden Promise Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.0 97.9 GSM372983 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.0 97.9 GSM373009 genotype: 11542 - pathogen isolates: K1 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 4e-60 232 HO15C14S_s_at HO15C14S - - 2e+0 At5g55210 unknown protein C.G. S.X.
0.01 5e-1 36 Contig6910_at Contig6910 - - 9e-4 At5g43590 patatin, putative C.G. S.X.
0.01 2e+0 34 HW07N02u_at HW07N02u - - 2e+0 At5g01510 - C.G. S.X.
0.01 2e+0 34 Contig944_at Contig944 - - 1e-18 At1g29910 CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3) C.G. S.X.
0.01 2e+0 34 Contig12715_at Contig12715 - - 2e+0 At3g49551 unknown protein C.G. S.X.
0.01 8e+0 32 Contig8507_at Contig8507 - - 2e-43 At3g03120 ATARFB1C (ADP-ribosylation factor B1C) C.G. S.X.
0.01 8e+0 32 Contig5116_at Contig5116 - - 6e-15 At2g18740 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative C.G. S.X.
0.01 8e+0 32 Contig16012_at Contig16012 - - 3e+0 At3g57490 40S ribosomal protein S2 (RPS2D) C.G. S.X.
0.01 8e+0 32 Contig819_at Contig819 - - 3e+0 At5g37770 TCH2 (TOUCH 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 3e-10 67 Arabidopsis thaliana At1g53390 841775 ATPase, coupled to transmembrane movement of substances F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPV - - - C.G. S.X.
0.01 9e-2 40 Glycine max PsAffx.C25000067_at PsAffx.C25000067 - - 7e+0 At4g36210 unknown protein C.G. S.X.
0.55 0 704 Oryza sativa Os04g0194500 AK121164.1 - ABC transporter-like protein 3e-11 At5g60740 ATPase, coupled to transmembrane movement of substances C.G. S.X.
0.14 4e-16 87 Populus trichocarpa PtpAffx.200237.1.S1_at pmrna455 white-brown-complex ABC transporter family - 7e-80 At5g60740 ATPase, coupled to transmembrane movement of substances C.G. S.X.
0.17 7e-82 305 Triticum aestivum TaAffx.29128.1.S1_at CA649809 - - 1e-3 At5g60740 ATPase, coupled to transmembrane movement of substances C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1616487_at CA811061 hypothetical protein LOC100247858 - 4e+0 At5g14930 SAG101 (SENESCENCE-ASSOCIATED GENE 101) C.G. S.X.
0.01 2e+0 34 Zea mays ZmAffx.1158.1.S1_at AW438209 - - 3e+0 At5g37475 translation initiation factor-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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