Gene omics information

Query gene ID	Contig10824_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig10824_at	Contig10824	-	-	7e-2	At5g11350	endonuclease/exonuclease/phosphatase family protein	S.X.	H.G.	Please select
0.60	77.3	Contig3699_s_at	Contig3699	-	-	1e+0	At2g26060	emb1345 (embryo defective 1345)	S.X.	H.G.	Please select
0.57	74.9	Contig7571_at	Contig7571	-	-	2e+0	At5g44070	CAD1 (CADMIUM SENSITIVE 1)	S.X.	H.G.	Please select
0.50	66.9	Contig4299_at	Contig4299	-	-	3e-7	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	S.X.	H.G.	Please select
0.30	37.0	Contig8312_at	Contig8312	-	-	1e-1	At3g23610	dual specificity protein phosphatase (DsPTP1)	S.X.	H.G.	Please select
0.29	35.5	Contig6264_at	Contig6264	-	-	2e-5	At3g11330	leucine-rich repeat family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.8	98.6	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.4	98.5	GSM372973	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.4	98.5	GSM372946	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.4	98.5	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.1	98.4	GSM372970	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.9	98.3	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.8	98.3	GSM372965	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.6	97.7	GSM372943	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.5	97.6	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.3	97.4	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-7	56	Contig6739_at	Contig6739	-	-	4e-40	At1g69340	appr-1-p processing enzyme family protein	C.G.	S.X.	Please select
0.03	3e-5	50	Contig13063_at	Contig13063	-	-	8e+0	Atmg01080	-	C.G.	S.X.	Please select
0.02	1e-4	48	Contig14686_at	Contig14686	-	-	1e-8	At4g28590	unknown protein	C.G.	S.X.	Please select
0.03	1e-4	48	Contig13103_at	Contig13103	-	-	2e+0	At5g10570	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.01	1e-4	48	Contig13070_at	Contig13070	-	-	2e-20	At1g08660	glycosyl transferase family 29 protein / sialyltransferase family protein	C.G.	S.X.	Please select
0.02	1e-4	48	Contig6501_s_at	Contig6501	-	-	2e+1	At5g18540	unknown protein	C.G.	S.X.	Please select
0.01	5e-4	46	Contig12886_at	Contig12886	-	-	7e-8	At1g71410	protein kinase family protein	C.G.	S.X.	Please select
0.02	2e-3	44	HT07N20u_at	HT07N20u	-	-	3e+1	At5g28288	-	C.G.	S.X.	Please select
0.02	2e-3	44	Contig5056_s_at	Contig5056	-	-	1e-1	At4g38470	protein kinase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-2	40	Arabidopsis thaliana	At5g11350	831006	endonuclease/exonuclease/phosphatase family protein	F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;MPFOBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e-4	48	Glycine max	Gma.18008.1.S1_at	BG652224	-	-	1e-9	At5g11350	endonuclease/exonuclease/phosphatase family protein	C.G.	S.X.	Please select
0.19	6e-81	303	Oryza sativa	Os01g0610600	AK120276.1	-	Endonuclease/exonuclease/phosphatase familyprotein	2e-3	At5g11350	endonuclease/exonuclease/phosphatase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-6	54	Populus trichocarpa	PtpAffx.17782.1.A1_a_at	CK097210	hypothetical protein	-	2e-3	At5g11350	endonuclease/exonuclease/phosphatase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.52	0	1039	Triticum aestivum	TaAffx.95068.2.S1_at	CA682257	-	-	3e-2	At5g11350	endonuclease/exonuclease/phosphatase family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Vitis vinifera	1617917_at	CF405637	-	-	4e+0	At1g53100	acetylglucosaminyltransferase	C.G.	S.X.	Please select
0.22	7e-40	165	Zea mays	Zm.18795.1.S1_at	CO526138	hypothetical protein LOC100273526	-	2e-8	At5g11350	endonuclease/exonuclease/phosphatase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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