Gene omics information

Query gene ID	Contig10800_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	58.9	Contig10800_at	Contig10800	-	-	2e-53	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	S.X.	H.G.	Please select
0.71	87.1	Contig8332_at	Contig8332	-	-	2e-8	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	S.X.	H.G.	Please select
0.67	84.7	HV_CEa0010M13r2_s_at	HV_CEa0010M13r2	-	-	9e-1	At4g01670	unknown protein	S.X.	H.G.	Please select
0.42	55.2	Contig19284_at	Contig19284	-	-	2e-20	At1g48410	AGO1 (ARGONAUTE 1)	S.X.	H.G.	Please select
0.26	30.4	Contig14904_at	Contig14904	-	-	2e+0	At2g28330	unknown protein	S.X.	H.G.	Please select
0.20	21.1	Contig12530_at	Contig12530	-	-	7e-1	At1g51070	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	97.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9	97.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.8	95.7	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.7	95.5	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	0	1053	Contig7022_at	Contig7022	-	-	3e-71	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	C.G.	S.X.	Please select
0.12	1e-22	107	Contig5442_at	Contig5442	-	-	4e-107	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	C.G.	S.X.	Please select
0.11	2e-15	83	Contig15575_at	Contig15575	-	-	3e-139	At2g42500	PP2A-4	C.G.	S.X.	Please select
0.12	9e-14	77	Contig5644_at	Contig5644	-	-	3e-114	At3g58500	PP2A-3 (PROTEIN PHOSPHATASE 2A-3)	C.G.	S.X.	Please select
0.09	9e-8	57	Contig5441_at	Contig5441	-	-	8e-84	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	C.G.	S.X.	Please select
0.09	9e-8	57	Contig5441_s_at	Contig5441	-	-	8e-84	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	C.G.	S.X.	Please select
0.03	1e-3	44	Contig6535_at	Contig6535	-	-	5e-34	At2g42500	PP2A-4	C.G.	S.X.	Please select
0.03	1e-3	44	Contig6535_s_at	Contig6535	-	-	5e-34	At2g42500	PP2A-4	C.G.	S.X.	Please select
0.02	8e-2	38	Contig1555_at	Contig1555	-	-	3e-20	At3g10950	60S ribosomal protein L37a (RPL37aB)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	2e-53	210	Arabidopsis thaliana	At1g69960	843333	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	type 2A serine/threonine protein phosphatase (PP2A) mRNA,	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.53	7e-122	438	Glycine max	Gma.10798.1.S1_at	CD401168	-	-	2e-158	At1g10430	PP2A-2	C.G.	S.X.	Please select
0.75	0	979	Oryza sativa	Os02g0217600	AK060905.1	-	Protein phosphatase 2A	4e-73	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.44	6e-39	163	Populus trichocarpa	Ptp.4495.3.S1_at	BU810858	hypothetical protein	-	3e-77	At1g10430	PP2A-2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	0	1013	Triticum aestivum	Ta.11307.1.S1_a_at	CK206732	-	-	3e-59	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	C.G.	S.X.	Please select
0.47	1e-92	339	Vitis vinifera	1621935_at	CD802055	-	-	2e-136	At1g10430	PP2A-2	C.G.	S.X.	Please select
0.61	0	1076	Zea mays	Zm.5141.1.A1_at	CF628146	-	-	2e-60	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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