Gene omics information

Query gene ID	Contig10791_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.43	56.4	Contig10791_s_at	Contig10791	-	-	2e-6	At1g02260	transmembrane protein, putative	S.X.	H.G.	Please select
0.46	61.0	Contig12701_at	Contig12701	-	-	9e-1	At5g67390	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig20317_at	Contig20317	-	-	1e-17	At1g65730	YSL7 (YELLOW STRIPE LIKE 7)	S.X.	H.G.	Please select
0.40	53.1	Contig12711_at	Contig12711	-	-	7e-1	At3g24810	ICK3	S.X.	H.G.	Please select
0.40	53.1	Contig4578_at	Contig4578	-	-	7e-9	At5g21150	PAZ domain-containing protein / piwi domain-containing protein	S.X.	H.G.	Please select
0.33	42.6	Contig8931_at	Contig8931	-	-	3e-3	At5g46750	AGD9 (ARF-GAP DOMAIN 9)	S.X.	H.G.	Please select
0.32	40.3	Contig12800_s_at	Contig12800	-	-	2e-5	At5g46340	O-acetyltransferase-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.2	99.8	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
16.7	99.6	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
16.7	99.6	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
16.0	99.6	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
15.5	99.6	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
15.5	99.6	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
13.8	99.5	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
13.8	99.5	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
13.5	99.5	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
12.7	99.4	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	1e-18	93	Contig10915_s_at	Contig10915	-	-	4e-1	At5g53140	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.10	1e-18	93	Contig10915_at	Contig10915	-	-	4e-1	At5g53140	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.08	3e-4	46	Contig25746_at	Contig25746	-	-	4e-1	At3g59620	-	C.G.	S.X.	Please select
0.08	7e-2	38	HS03L15u_at	HS03L15u	-	-	1e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	C.G.	S.X.	Please select
0.02	7e-2	38	Contig18698_at	Contig18698	-	-	4e+0	At5g13080	WRKY75	C.G.	S.X.	Please select
0.02	7e-2	38	Contig16694_at	Contig16694	-	-	2e-3	At1g58420	-	C.G.	S.X.	Please select
0.02	3e-1	36	Contig19621_at	Contig19621	-	-	1e-3	At1g09570	PHYA (PHYTOCHROME A)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig16070_at	Contig16070	-	-	9e+0	At5g43410	ethylene-responsive factor, putative	C.G.	S.X.	Please select
0.02	3e-1	36	Contig1507_at	Contig1507	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-6	54	Arabidopsis thaliana	At1g02260	839344	transmembrane protein, putative	F:citrate transmembrane transporter activity, transporter activity;P:citrate transport;C:endomembrane system, integral to membrane;BOMAPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	36	Glycine max	Gma.7970.1.S1_at	BI699189	-	-	3e-1	At3g55170	60S ribosomal protein L35 (RPL35C)	C.G.	S.X.	Please select
0.42	5e-129	462	Oryza sativa	Os10g0447900	AK072242.1	-	Conserved hypothetical protein	6e-12	At1g02260	transmembrane protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	PtpAffx.200843.1.S1_at	pmrna1638	hypothetical protein	-	3e+0	At3g52710	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.69	0	1223	Triticum aestivum	Ta.4763.1.S1_a_at	CA731559	-	-	8e-4	At1g02260	transmembrane protein, putative	C.G.	S.X.	Please select
0.03	4e-2	38	Vitis vinifera	1616734_at	CF405846	hypothetical protein LOC100254730	-	4e+0	At4g29670	thioredoxin family protein	C.G.	S.X.	Please select
0.25	3e-34	145	Zea mays	Zm.5820.1.A1_at	BG319905	citrate transporter family protein	-	7e-11	At1g02260	transmembrane protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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