Gene omics information

Query gene ID	Contig10767_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	72.0	Contig10767_at	Contig10767	-	-	3e-15	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	S.X.	H.G.	Please select
0.29	35.5	Contig8293_at	Contig8293	-	-	1e-1	At3g06300	AT-P4H-2 (A. THALIANA P4H ISOFORM 2)	S.X.	H.G.	Please select
0.19	19.6	Contig25322_at	Contig25322	-	-	3e+0	At1g28310	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please select
0.12	10.4	Contig12129_at	Contig12129	-	-	2e-14	At4g30020	subtilase family protein	S.X.	H.G.	Please select
0.10	8.4	Contig9551_at	Contig9551	-	-	1e-5	At5g08170	EMB1873 (EMBRYO DEFECTIVE 1873)	S.X.	H.G.	Please select
0.06	4.8	Contig15125_at	Contig15125	-	-	2e-9	At5g43700	ATAUX2-11 (AUXIN INDUCIBLE 2-11)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.1	99.9	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
25.7	99.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.1	99.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.6	99.0	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.7	98.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.1	98.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.2	98.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	4e-37	155	Contig13701_at	Contig13701	-	-	3e-12	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	C.G.	S.X.	Please select
0.31	4e-34	145	Contig10148_at	Contig10148	-	-	2e-22	At5g65700	BAM1 (BARELY ANY MERISTEM 1)	C.G.	S.X.	Please select
0.09	3e-13	75	Contig12629_s_at	Contig12629	-	-	6e-4	At1g16110	WAKL6 (wall associated kinase-like 6)	C.G.	S.X.	Please select
0.09	3e-13	75	Contig12629_at	Contig12629	-	-	6e-4	At1g16110	WAKL6 (wall associated kinase-like 6)	C.G.	S.X.	Please select
0.06	5e-12	71	Contig15156_at	Contig15156	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.07	5e-12	71	Contig14472_at	Contig14472	-	-	4e-8	At1g28440	HSL1 (HAESA-Like 1)	C.G.	S.X.	Please select
0.03	2e-11	69	Contig14065_at	Contig14065	-	-	6e-8	At5g49770	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.10	1e-9	63	Contig13821_at	Contig13821	-	-	5e-4	At2g48010	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	C.G.	S.X.	Please select
0.04	5e-9	61	HT05J08u_at	HT05J08u	-	-	7e-2	At4g05070	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-15	83	Arabidopsis thaliana	At3g49670	824129	BAM2 (BARELY ANY MERISTEM 2)	Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e-5	52	Glycine max	Gma.2496.1.S1_at	AF244888.1	receptor-like protein kinase 1	-	1e-75	At5g65700	BAM1 (BARELY ANY MERISTEM 1)	C.G.	S.X.	Please select
0.32	0	963	Oryza sativa	Os03g0228800	AK121286.1	-	Protein kinase domain containing protein	3e-17	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	1e-8	61	Populus trichocarpa	PtpAffx.64361.1.S1_s_at	CV228112	hypothetical protein	-	5e-63	At5g65700	BAM1 (BARELY ANY MERISTEM 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.54	0	696	Triticum aestivum	TaAffx.109207.1.S1_at	CA678684	-	-	3e-4	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	C.G.	S.X.	Please select
0.10	3e-18	91	Vitis vinifera	1616189_at	CF511570	hypothetical protein LOC100260741	-	6e-18	At1g75820	CLV1 (CLAVATA 1)	C.G.	S.X.	Please select
0.56	0	759	Zea mays	Zm.1140.1.S1_at	BM073428	hypothetical protein LOC100279272	-	4e-14	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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