CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig10750_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig10750_at Contig10750 - - 1e-4 At1g51600 TIFY2A S.X. H.G.
0.77 90.8 Contig22141_at Contig22141 - - 3e+0 At3g07440 unknown protein S.X. H.G.
0.67 84.7 Contig13923_at Contig13923 - - 1e+0 At3g61172 LCR8 (Low-molecular-weight cysteine-rich 8) S.X. H.G.
0.60 77.3 HVSMEc0010O09r2_at HVSMEc0010O09r2 - - 1e+0 At5g28630 glycine-rich protein S.X. H.G.
0.50 66.9 Contig15729_at Contig15729 - - 3e-2 At3g11280 myb family transcription factor S.X. H.G.
0.20 21.1 Contig7120_at Contig7120 - - 4e-18 At1g55880 pyridoxal-5'-phosphate-dependent enzyme, beta family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.0 99.8 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
16.0 99.6 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.8 99.3 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.8 97.8 GSM261043 before 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.7 97.7 GSM261044 before 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9 97.1 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.7 96.9 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.4 96.6 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.2 96.3 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 34 Contig6806_at Contig6806 - - 2e-17 At3g25860 LTA2 C.G. S.X.
0.01 1e+0 34 Contig13982_at Contig13982 - - 2e-4 At4g15480 UGT84A1 C.G. S.X.
0.01 1e+0 34 Contig4498_at Contig4498 - - 2e-1 At1g28290 AGP31 (arabinogalactan-protein 31) C.G. S.X.
0.02 1e+0 34 Contig9959_at Contig9959 - - 4e-4 At1g02840 SR1 C.G. S.X.
0.01 1e+0 34 Contig8366_at Contig8366 - - 4e-3 At3g52170 DNA binding C.G. S.X.
0.01 1e+0 34 Contig5260_s_at Contig5260 - - 0 At2g29630 THIC (ThiaminC) C.G. S.X.
0.01 1e+0 34 Contig5260_at Contig5260 - - 0 At2g29630 THIC (ThiaminC) C.G. S.X.
0.01 1e+0 34 Contig3767_at Contig3767 - - 3e-16 At2g23350 PAB4 (POLY(A) BINDING PROTEIN 4) C.G. S.X.
0.01 1e+0 34 Contig3036_at Contig3036 - - 8e-15 At5g61780 tudor domain-containing protein / nuclease family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-4 48 Arabidopsis thaliana At1g51600 841585 TIFY2A member of a novel family of plant-specific GATA-type transcription factors. - - - C.G. S.X.
0.02 7e-1 36 Glycine max PsAffx.CL1586Contig1_at PsAffx.CL1586Contig1 - - 6e+0 At4g03950 glucose-6-phosphate/phosphate translocator, putative C.G. S.X.
0.23 6e-33 143 Oryza sativa Os02g0148500 AK068931.1 - Zn-finger, GATA type domain containing protein 1e-14 At3g21175 ZML1 (ZIM-LIKE 1) C.G. S.X.
0.10 7e-1 36 Populus trichocarpa PtpAffx.207013.1.S1_at pmrna13890 hypothetical protein - 1e-10 At3g21175 ZML1 (ZIM-LIKE 1) C.G. S.X.
0.67 0 894 Triticum aestivum TaAffx.60004.1.S1_at CA502399 - - 1e-4 At1g51600 TIFY2A C.G. S.X.
0.07 2e-4 46 Vitis vinifera 1620757_at CF372931 hypothetical protein LOC100260825 - 4e-3 At1g51600 TIFY2A C.G. S.X.
0.16 2e-10 65 Zea mays Zm.7914.1.A1_at AY103800.1 hypothetical protein LOC100277669 - 5e-11 At3g21175 ZML1 (ZIM-LIKE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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